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The map label for this gene is ycjO [H]

Identifier: 226225388

GI number: 226225388

Start: 2893307

End: 2894188

Strand: Reverse

Name: ycjO [H]

Synonym: Lm4b_02811

Alternate gene names: 226225388

Gene position: 2894188-2893307 (Counterclockwise)

Preceding gene: 226225389

Following gene: 226225387

Centisome position: 99.36

GC content: 35.15

Gene sequence:

>882_bases
ATGAAAACGAAAGTATATAAAAGGTCCGACTTTAAGTTAGCAATGATTTTACTTGCGCCAAGTTTTGTTTTACTGGCAGC
ACTTGTTTTATATCCGATGATTTCAAATATCCAGATTAGTTTTTTAGATATGCCACTAAATCCGAATATTAAATCAGTCT
TTATCGGTTTACAAAACTATATAGATATTTTGAAGGATCCAGAGTTTTATAAATCACTAGGTCTTACTGTGGCTTATACA
GTACTTGTAGTGGTTGGAAGTACTGGGATGGGACTACTTGTGGCGATTTTCTTTAACCGCGAATTTCGTTTTAGAAGAAC
GGCTCGGTCGCTTATTATTTTGTCATATGTAACACCATCTATTTCTCTTATTTTTGCATGGAAATATATGTTTAATAATG
GTTATGGCGTAATTAATTTTATGACTGTGGATGTACTCCATCTGTTCAAAGAAGCGCCACTTTGGTTTGATAATCCAGTT
TCTAGTTTCTTTTTAGTAACCTTTTTTGCAATATGGCGTTACTTCCCGTATGCATTTATTTCGTTTTTAGCGATTTTGCA
AACGGTCGATAAGTCGCTTTATGAGGCGGCTGATATGGACGGAGCGAACATTTGGGATAAATTCAAAATTGTTACTTTGC
CAGCGATTATGCCGGTACTTGCAACAGTTATTACGCTTCGTGCGATTTGGATGTTCTATATGTTCACCGATGTATACTTA
CTCACGAATAAAGTAAACATCCTTGGAGTTTATTTATATAAAACAGCATTCGCATTCAATGATTTAGGGAAAGCAGCAGC
GATTTCTGTCATATTATTTGTCATTATTTTTGTTGTGATTATTTTTGCAAGAAAGCGGGTGGATTTGAATGGCGGTAAGT
AG

Upstream 100 bases:

>100_bases
GAAAAAAGCTGAAGAAGGTAAATAATCAAATAGCGGGGAGTTGAGTCTCCCCGTCTTTTTTAACAGTTTAGTACGTCGCT
TTTTGATTTAAGGAGGCATT

Downstream 100 bases:

>100_bases
TAAAAAGTCAAAAAGAACAAAGAAAATCGCGTTTTATGTGACGATGGTTGCATTTTTATGTATCACGTTGTTCCCATTTG
CGATTATGTTAATGACTTCA

Product: sugar ABC transporter permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MKTKVYKRSDFKLAMILLAPSFVLLAALVLYPMISNIQISFLDMPLNPNIKSVFIGLQNYIDILKDPEFYKSLGLTVAYT
VLVVVGSTGMGLLVAIFFNREFRFRRTARSLIILSYVTPSISLIFAWKYMFNNGYGVINFMTVDVLHLFKEAPLWFDNPV
SSFFLVTFFAIWRYFPYAFISFLAILQTVDKSLYEAADMDGANIWDKFKIVTLPAIMPVLATVITLRAIWMFYMFTDVYL
LTNKVNILGVYLYKTAFAFNDLGKAAAISVILFVIIFVVIIFARKRVDLNGGK

Sequences:

>Translated_293_residues
MKTKVYKRSDFKLAMILLAPSFVLLAALVLYPMISNIQISFLDMPLNPNIKSVFIGLQNYIDILKDPEFYKSLGLTVAYT
VLVVVGSTGMGLLVAIFFNREFRFRRTARSLIILSYVTPSISLIFAWKYMFNNGYGVINFMTVDVLHLFKEAPLWFDNPV
SSFFLVTFFAIWRYFPYAFISFLAILQTVDKSLYEAADMDGANIWDKFKIVTLPAIMPVLATVITLRAIWMFYMFTDVYL
LTNKVNILGVYLYKTAFAFNDLGKAAAISVILFVIIFVVIIFARKRVDLNGGK
>Mature_293_residues
MKTKVYKRSDFKLAMILLAPSFVLLAALVLYPMISNIQISFLDMPLNPNIKSVFIGLQNYIDILKDPEFYKSLGLTVAYT
VLVVVGSTGMGLLVAIFFNREFRFRRTARSLIILSYVTPSISLIFAWKYMFNNGYGVINFMTVDVLHLFKEAPLWFDNPV
SSFFLVTFFAIWRYFPYAFISFLAILQTVDKSLYEAADMDGANIWDKFKIVTLPAIMPVLATVITLRAIWMFYMFTDVYL
LTNKVNILGVYLYKTAFAFNDLGKAAAISVILFVIIFVVIIFARKRVDLNGGK

Specific function: Probably part of the binding-protein-dependent transport system ycjNOP. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG1175

COG function: function code G; ABC-type sugar transport systems, permease components

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=286, Percent_Identity=75.1748251748252, Blast_Score=429, Evalue=1e-121,
Organism=Escherichia coli, GI1789861, Length=290, Percent_Identity=26.8965517241379, Blast_Score=92, Evalue=4e-20,
Organism=Escherichia coli, GI1790465, Length=260, Percent_Identity=28.4615384615385, Blast_Score=89, Evalue=3e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33481; Mature: 33481

Theoretical pI: Translated: 10.00; Mature: 10.00

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKTKVYKRSDFKLAMILLAPSFVLLAALVLYPMISNIQISFLDMPLNPNIKSVFIGLQNY
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHH
IDILKDPEFYKSLGLTVAYTVLVVVGSTGMGLLVAIFFNREFRFRRTARSLIILSYVTPS
HHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHEEEEHHCCH
ISLIFAWKYMFNNGYGVINFMTVDVLHLFKEAPLWFDNPVSSFFLVTFFAIWRYFPYAFI
HHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
SFLAILQTVDKSLYEAADMDGANIWDKFKIVTLPAIMPVLATVITLRAIWMFYMFTDVYL
HHHHHHHHHHHHHHHHHCCCCCCCHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTNKVNILGVYLYKTAFAFNDLGKAAAISVILFVIIFVVIIFARKRVDLNGGK
HHCCHHHEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
>Mature Secondary Structure
MKTKVYKRSDFKLAMILLAPSFVLLAALVLYPMISNIQISFLDMPLNPNIKSVFIGLQNY
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHH
IDILKDPEFYKSLGLTVAYTVLVVVGSTGMGLLVAIFFNREFRFRRTARSLIILSYVTPS
HHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHEEEEHHCCH
ISLIFAWKYMFNNGYGVINFMTVDVLHLFKEAPLWFDNPVSSFFLVTFFAIWRYFPYAFI
HHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
SFLAILQTVDKSLYEAADMDGANIWDKFKIVTLPAIMPVLATVITLRAIWMFYMFTDVYL
HHHHHHHHHHHHHHHHHCCCCCCCHHHEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LTNKVNILGVYLYKTAFAFNDLGKAAAISVILFVIIFVVIIFARKRVDLNGGK
HHCCHHHEEHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]