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The map label for this gene is ycjR [H]

Identifier: 226225385

GI number: 226225385

Start: 2890591

End: 2891385

Strand: Reverse

Name: ycjR [H]

Synonym: Lm4b_02808

Alternate gene names: 226225385

Gene position: 2891385-2890591 (Counterclockwise)

Preceding gene: 226225386

Following gene: 226225384

Centisome position: 99.27

GC content: 38.87

Gene sequence:

>795_bases
ATGAAATTAGGCACACAAAACCAAGCATTTTTCCCAGAAAATATAGAAGAAAAATTTGCTTATGTAAAAGAAATGGGCTT
TGAAGGTTTTGAAATTGATGGTAAATTACTTGTTGAAAATTTGGACGAAGTGAAGAAAGCTATCGAAAAAACGGGGCTAC
CTGTTAGTACTGCATGTGGTGGCTATGACGGCTGGATTGGTGACTTCATTGAAGAGCGCAGACTGAATGGTTTAGAAGAA
ATTAAAGCGATTTTAGAAGCTTTAGCAGAAGTCGGTGGGCAAGGGATTGTCGTTCCAGCGGCGTGGGGGATGTTCACGTA
TCGTCTTCCGCCAATGGTTTCGCCGCGTAGCCAAGCCGGAGATTTCAAAGCAGTGAGCGAGTCGTTGGTTTATTTGGACA
AAATTGCTGGTGAAACTGGGACGAAGGTTTATCTTGAGCCGCTTAACAGATACCAAGATCATATGATTAATTTGCTAAGT
GATGCGCAAAAATATATTGATGAAAATGAACTTAAAAATGTAGAAATTATCGCTGATTTCTATCATATGAATATTGAAGA
AGATAGCATTCCGACTGTGCTTGAGACGTATAAAGATTCGATCGGTCACATTCATGTTGCTGACAATCATCGCTACCAAC
CAGGAAGCGGTAGCCTTGATTTTAAAACAAGTTTTGATCAACTGAAAAAGAACGGTTACAACGGATTTTTAACTTTTGAA
TGTCGTGTTCGCAGTGAAAATCCAGAACAAGCTTATAAAGATGCGTTGGCACATTTAAAAAGCTGTTTAATTTAA

Upstream 100 bases:

>100_bases
CGTTCCGTTTGCAGATTCAGCTGAGAGCTACATGAAATACGTCGATCAACAACCTGATTTAAGTATTAAAATGGGGATTA
CCCTTTAAGGAGCGATAATA

Downstream 100 bases:

>100_bases
AATAGAAAATCCGTCCCAATTAAAGCGGACGGATTTTTCTAAAAGGAGTTTCGGATATGAAGAAAAGAGTTGCAATTATC
GGTGCTGGACAAGTCGCTGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 264

Protein sequence:

>264_residues
MKLGTQNQAFFPENIEEKFAYVKEMGFEGFEIDGKLLVENLDEVKKAIEKTGLPVSTACGGYDGWIGDFIEERRLNGLEE
IKAILEALAEVGGQGIVVPAAWGMFTYRLPPMVSPRSQAGDFKAVSESLVYLDKIAGETGTKVYLEPLNRYQDHMINLLS
DAQKYIDENELKNVEIIADFYHMNIEEDSIPTVLETYKDSIGHIHVADNHRYQPGSGSLDFKTSFDQLKKNGYNGFLTFE
CRVRSENPEQAYKDALAHLKSCLI

Sequences:

>Translated_264_residues
MKLGTQNQAFFPENIEEKFAYVKEMGFEGFEIDGKLLVENLDEVKKAIEKTGLPVSTACGGYDGWIGDFIEERRLNGLEE
IKAILEALAEVGGQGIVVPAAWGMFTYRLPPMVSPRSQAGDFKAVSESLVYLDKIAGETGTKVYLEPLNRYQDHMINLLS
DAQKYIDENELKNVEIIADFYHMNIEEDSIPTVLETYKDSIGHIHVADNHRYQPGSGSLDFKTSFDQLKKNGYNGFLTFE
CRVRSENPEQAYKDALAHLKSCLI
>Mature_264_residues
MKLGTQNQAFFPENIEEKFAYVKEMGFEGFEIDGKLLVENLDEVKKAIEKTGLPVSTACGGYDGWIGDFIEERRLNGLEE
IKAILEALAEVGGQGIVVPAAWGMFTYRLPPMVSPRSQAGDFKAVSESLVYLDKIAGETGTKVYLEPLNRYQDHMINLLS
DAQKYIDENELKNVEIIADFYHMNIEEDSIPTVLETYKDSIGHIHVADNHRYQPGSGSLDFKTSFDQLKKNGYNGFLTFE
CRVRSENPEQAYKDALAHLKSCLI

Specific function: Unknown

COG id: COG1082

COG function: function code G; Sugar phosphate isomerases/epimerases

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hyi family [H]

Homologues:

Organism=Escherichia coli, GI87081874, Length=262, Percent_Identity=70.2290076335878, Blast_Score=407, Evalue=1e-115,
Organism=Escherichia coli, GI1786718, Length=120, Percent_Identity=29.1666666666667, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013022
- InterPro:   IPR012307 [H]

Pfam domain/function: PF01261 AP_endonuc_2 [H]

EC number: NA

Molecular weight: Translated: 29719; Mature: 29719

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKLGTQNQAFFPENIEEKFAYVKEMGFEGFEIDGKLLVENLDEVKKAIEKTGLPVSTACG
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
GYDGWIGDFIEERRLNGLEEIKAILEALAEVGGQGIVVPAAWGMFTYRLPPMVSPRSQAG
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEECHHCHHEECCCCCCCCCCCCC
DFKAVSESLVYLDKIAGETGTKVYLEPLNRYQDHMINLLSDAQKYIDENELKNVEIIADF
CHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCEEEEEH
YHMNIEEDSIPTVLETYKDSIGHIHVADNHRYQPGSGSLDFKTSFDQLKKNGYNGFLTFE
HHCCCCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEE
CRVRSENPEQAYKDALAHLKSCLI
EEECCCCHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKLGTQNQAFFPENIEEKFAYVKEMGFEGFEIDGKLLVENLDEVKKAIEKTGLPVSTACG
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
GYDGWIGDFIEERRLNGLEEIKAILEALAEVGGQGIVVPAAWGMFTYRLPPMVSPRSQAG
CCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCEEEEECHHCHHEECCCCCCCCCCCCC
DFKAVSESLVYLDKIAGETGTKVYLEPLNRYQDHMINLLSDAQKYIDENELKNVEIIADF
CHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHCHHHCCCCEEEEEH
YHMNIEEDSIPTVLETYKDSIGHIHVADNHRYQPGSGSLDFKTSFDQLKKNGYNGFLTFE
HHCCCCCCCCHHHHHHHHHHCCEEEECCCCCCCCCCCCCCCCCCHHHHHHCCCCEEEEEE
CRVRSENPEQAYKDALAHLKSCLI
EEECCCCHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]