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The map label for this gene is ycjS [H]

Identifier: 226225384

GI number: 226225384

Start: 2889503

End: 2890534

Strand: Reverse

Name: ycjS [H]

Synonym: Lm4b_02807

Alternate gene names: 226225384

Gene position: 2890534-2889503 (Counterclockwise)

Preceding gene: 226225385

Following gene: 226225383

Centisome position: 99.24

GC content: 42.15

Gene sequence:

>1032_bases
ATGAAGAAAAGAGTTGCAATTATCGGTGCTGGACAAGTCGCTGAGAAGGTCCACGCTGCGTATTATAAGACAAGAAATGA
ACTGGAGCTTGTAGCTGTTTGCGACCCAAGTTTGGAGCGTGGCGAAGAGTTTCGTGCGAACAATGGTTTTGAGAAGCATT
ATGCTACGGCAGAAGAGATGTTTGCGGTCGAGAAAATCGATATTATTAGTATTTGCACGCCTAATCGGTTCCATTTTGAT
AATGTGATGTTGTCACTAGCGAATGGAGCAGCCGTTATGTGTGAAAAGCCACCCGCAATGAGTGCGGCGGAAGCGAAAGC
AATGTGGGAACTTGCGGAAGAAAAAGGCGCGATTTTGGCGTATGATTTTCATCATCGTTTTTCCAGTGAAGCACAGTTTT
TAAAGAGAAATTCGGCGCTTCTAGGTGAAATTTATTGTGTGAAAGCAACTGCGCTTCGTCGTTCTGGCGTGCCGGGTTGG
GGAACTTTTACGAATAAAGAAATGCAAGGCGGGGGTCCGCTGATTGATATGGGAATTCACATGCTCGACGCGGCGATGTT
TGTCCTTGGTTTTCCAAAAGTGAAGAAAGTAACGGCAAAAAGTTTTCAAAAAATCGGAACCAAGAAAAGTGCGGGGACAT
TTGGTTCATGGGATCCGGAAAAATATACGGTAGAGGATTCTTTATTCGGCTTTATTGAACTGGAAAATGGCGGATTAATT
GAATTAGATACTTCTTTTGCGCTACATATCAAGCCAGAAAGTGCGCTAAATGTTGATTTTTTCGGTGATTTAGCAGGAGG
CAGTTTATACCCGGCTGAAATTTATACAGATAATGCAGGTGAATTTCAGTTGTTAGAGAAGTTAGGACAACTGGAAGAAA
ATAAACACGAAAACAGCATGAAAGCATTTGTTGATAGCGTTCTTGGTGCTGGAAAAGTGGAACTTGCTGGCGCTGAACAA
GGTTATATCATACAAAAAATTGTTGAAAGTTTATACGAATCGGCAGAAAAAGGTGAGAGTGTTTCTTTATGA

Upstream 100 bases:

>100_bases
CTTATAAAGATGCGTTGGCACATTTAAAAAGCTGTTTAATTTAAAATAGAAAATCCGTCCCAATTAAAGCGGACGGATTT
TTCTAAAAGGAGTTTCGGAT

Downstream 100 bases:

>100_bases
AGAAAATAATCGAGAAGGAATTTGCATTAAATTATCTAAATAAATATGGTAGCCAAATGACTGTGGGAAATGGCTATTTG
GGCGTGCGCGGTGCTCTTGA

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 343; Mature: 343

Protein sequence:

>343_residues
MKKRVAIIGAGQVAEKVHAAYYKTRNELELVAVCDPSLERGEEFRANNGFEKHYATAEEMFAVEKIDIISICTPNRFHFD
NVMLSLANGAAVMCEKPPAMSAAEAKAMWELAEEKGAILAYDFHHRFSSEAQFLKRNSALLGEIYCVKATALRRSGVPGW
GTFTNKEMQGGGPLIDMGIHMLDAAMFVLGFPKVKKVTAKSFQKIGTKKSAGTFGSWDPEKYTVEDSLFGFIELENGGLI
ELDTSFALHIKPESALNVDFFGDLAGGSLYPAEIYTDNAGEFQLLEKLGQLEENKHENSMKAFVDSVLGAGKVELAGAEQ
GYIIQKIVESLYESAEKGESVSL

Sequences:

>Translated_343_residues
MKKRVAIIGAGQVAEKVHAAYYKTRNELELVAVCDPSLERGEEFRANNGFEKHYATAEEMFAVEKIDIISICTPNRFHFD
NVMLSLANGAAVMCEKPPAMSAAEAKAMWELAEEKGAILAYDFHHRFSSEAQFLKRNSALLGEIYCVKATALRRSGVPGW
GTFTNKEMQGGGPLIDMGIHMLDAAMFVLGFPKVKKVTAKSFQKIGTKKSAGTFGSWDPEKYTVEDSLFGFIELENGGLI
ELDTSFALHIKPESALNVDFFGDLAGGSLYPAEIYTDNAGEFQLLEKLGQLEENKHENSMKAFVDSVLGAGKVELAGAEQ
GYIIQKIVESLYESAEKGESVSL
>Mature_343_residues
MKKRVAIIGAGQVAEKVHAAYYKTRNELELVAVCDPSLERGEEFRANNGFEKHYATAEEMFAVEKIDIISICTPNRFHFD
NVMLSLANGAAVMCEKPPAMSAAEAKAMWELAEEKGAILAYDFHHRFSSEAQFLKRNSALLGEIYCVKATALRRSGVPGW
GTFTNKEMQGGGPLIDMGIHMLDAAMFVLGFPKVKKVTAKSFQKIGTKKSAGTFGSWDPEKYTVEDSLFGFIELENGGLI
ELDTSFALHIKPESALNVDFFGDLAGGSLYPAEIYTDNAGEFQLLEKLGQLEENKHENSMKAFVDSVLGAGKVELAGAEQ
GYIIQKIVESLYESAEKGESVSL

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Homo sapiens, GI7657212, Length=202, Percent_Identity=29.2079207920792, Blast_Score=69, Evalue=5e-12,
Organism=Escherichia coli, GI1787574, Length=342, Percent_Identity=56.7251461988304, Blast_Score=408, Evalue=1e-115,
Organism=Escherichia coli, GI145693182, Length=202, Percent_Identity=26.7326732673267, Blast_Score=70, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24581115, Length=159, Percent_Identity=29.559748427673, Blast_Score=75, Evalue=7e-14,
Organism=Drosophila melanogaster, GI24581117, Length=187, Percent_Identity=26.7379679144385, Blast_Score=65, Evalue=8e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 37592; Mature: 37592

Theoretical pI: Translated: 4.98; Mature: 4.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKRVAIIGAGQVAEKVHAAYYKTRNELELVAVCDPSLERGEEFRANNGFEKHYATAEEM
CCCEEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCCHHCCCHHHCCCCHHHHHCCHHHH
FAVEKIDIISICTPNRFHFDNVMLSLANGAAVMCEKPPAMSAAEAKAMWELAEEKGAILA
HHHHCEEEEEEECCCCEEHHHHHEECCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEE
YDFHHRFSSEAQFLKRNSALLGEIYCVKATALRRSGVPGWGTFTNKEMQGGGPLIDMGIH
EEHHHHCCHHHHHHHHCCCCEEEEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
MLDAAMFVLGFPKVKKVTAKSFQKIGTKKSAGTFGSWDPEKYTVEDSLFGFIELENGGLI
HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCEEEEEEECCCCEE
ELDTSFALHIKPESALNVDFFGDLAGGSLYPAEIYTDNAGEFQLLEKLGQLEENKHENSM
EEECCEEEEECCCCCCCEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHH
KAFVDSVLGAGKVELAGAEQGYIIQKIVESLYESAEKGESVSL
HHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure
MKKRVAIIGAGQVAEKVHAAYYKTRNELELVAVCDPSLERGEEFRANNGFEKHYATAEEM
CCCEEEEEECHHHHHHHHHHHHHCCCCEEEEEEECCCHHCCCHHHCCCCHHHHHCCHHHH
FAVEKIDIISICTPNRFHFDNVMLSLANGAAVMCEKPPAMSAAEAKAMWELAEEKGAILA
HHHHCEEEEEEECCCCEEHHHHHEECCCCCEEEECCCCCCCHHHHHHHHHHHHHCCCEEE
YDFHHRFSSEAQFLKRNSALLGEIYCVKATALRRSGVPGWGTFTNKEMQGGGPLIDMGIH
EEHHHHCCHHHHHHHHCCCCEEEEEEEEHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHH
MLDAAMFVLGFPKVKKVTAKSFQKIGTKKSAGTFGSWDPEKYTVEDSLFGFIELENGGLI
HHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCEEEEEEECCCCEE
ELDTSFALHIKPESALNVDFFGDLAGGSLYPAEIYTDNAGEFQLLEKLGQLEENKHENSM
EEECCEEEEECCCCCCCEEEECCCCCCCCCCCEEEECCCCHHHHHHHHHHHHHCCCHHHH
KAFVDSVLGAGKVELAGAEQGYIIQKIVESLYESAEKGESVSL
HHHHHHHHCCCCEEECCCCCCHHHHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]