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The map label for this gene is ydgJ [H]

Identifier: 226224766

GI number: 226224766

Start: 2243435

End: 2244484

Strand: Reverse

Name: ydgJ [H]

Synonym: Lm4b_02184

Alternate gene names: 226224766

Gene position: 2244484-2243435 (Counterclockwise)

Preceding gene: 226224767

Following gene: 226224765

Centisome position: 77.06

GC content: 40.29

Gene sequence:

>1050_bases
ATGAAAAAATATCAATTAGTAATTATTGGTTACGGCGGGATGGGAAGCTATCATGTAACGCTTGCATCGGCTGCTAATAA
TTTGGAAGTTCACGGTGTATTCGACATTCTAGCAGAAAAACGTGAAGCCGCTGCCCAAAAAGGTTTGAAAATCTATGAAA
GTTTTGAAGCGGTTTTAGCGGATGAAAAAGTAGATGCAGTTCTTATCGCGACACCGAATGATAGCCATAAAGAACTGGCG
ATTACTGCACTTGAAGCAGGCAAGCATGTTGTTTGCGAGAAACCAGTGACAATGACAAGCGAAGATTTACTAGCAATTAT
GGACGTGGCTAAAAGAGTAAATAAACATTTTATGGTGCATCAAAATAGACGTTGGGACGAAGATTTCCTGATTATTAAAG
AAATGTTTGAACAAAAAACGATCGGTGAAATGTTCCACTTGGAATCACGTGTCCACGGAGCAAATGGTATTCCAGGAGAT
TGGCGTCATTTGAAAGCACATGGCGGCGGGATGGTACTTGATTGGGGTGTGCATCTACTTGACCAATTGTTATTCCTAGT
AGATAGTAACGTGAAATCTGTATCTGCTAATCTAAGTTTTGCGCTTGGGGATGAAGTCGATGATGGCTTCGTCACGTTCA
TTACTTTCGAAAATGGCATTACCGCTCAAATTGAGGTAGGCACAACGAACTTCATTAAATTACCTCGCTGGTATGTCAAA
GGTACAGAAGGAACTGGAATTATCCACGACTGGGATTTAAGCGGGGAAATCGTCAAACCAACCGCACTCGCTAAAACGTC
TGAGCCAACGCCAATTAAAGCAGGGCAAGGGCTTACAAAAACAATGGCACCACCAAGCGAAGAAGCAACCAATACATTAT
CGCTTCCAGCACCTGCCAAATTAGCTCCATCTTTTTATAATAATTTTGTCGATGTTTTAAATAATACGAGTGAACCAATC
GTTCAAAATGAAGAAGTTTATCAAGTTTTAAAATTGATTGAAGCCATATTTGAAGCGGCTGAGACAAATCGAACTATCCA
TTCTATTTAA

Upstream 100 bases:

>100_bases
GAAGGATTCGACCGTGCTGTTACAAACTTACAATCGATTTTAATTAAAGATAAACCACTGGATATGTGGTGGGCTTAACG
ATAAGAAAGGGTGTCTTAGG

Downstream 100 bases:

>100_bases
AAAAGATGTTTTAGCTTCCTAAACTGTGGAAAACACTACTATGGAGATAAAGAATTCTTCATTAGAAAATATTCTAATTA
GGAGGCAATATCAATGAGCG

Product: oxidoreductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 349; Mature: 349

Protein sequence:

>349_residues
MKKYQLVIIGYGGMGSYHVTLASAANNLEVHGVFDILAEKREAAAQKGLKIYESFEAVLADEKVDAVLIATPNDSHKELA
ITALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHFMVHQNRRWDEDFLIIKEMFEQKTIGEMFHLESRVHGANGIPGD
WRHLKAHGGGMVLDWGVHLLDQLLFLVDSNVKSVSANLSFALGDEVDDGFVTFITFENGITAQIEVGTTNFIKLPRWYVK
GTEGTGIIHDWDLSGEIVKPTALAKTSEPTPIKAGQGLTKTMAPPSEEATNTLSLPAPAKLAPSFYNNFVDVLNNTSEPI
VQNEEVYQVLKLIEAIFEAAETNRTIHSI

Sequences:

>Translated_349_residues
MKKYQLVIIGYGGMGSYHVTLASAANNLEVHGVFDILAEKREAAAQKGLKIYESFEAVLADEKVDAVLIATPNDSHKELA
ITALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHFMVHQNRRWDEDFLIIKEMFEQKTIGEMFHLESRVHGANGIPGD
WRHLKAHGGGMVLDWGVHLLDQLLFLVDSNVKSVSANLSFALGDEVDDGFVTFITFENGITAQIEVGTTNFIKLPRWYVK
GTEGTGIIHDWDLSGEIVKPTALAKTSEPTPIKAGQGLTKTMAPPSEEATNTLSLPAPAKLAPSFYNNFVDVLNNTSEPI
VQNEEVYQVLKLIEAIFEAAETNRTIHSI
>Mature_349_residues
MKKYQLVIIGYGGMGSYHVTLASAANNLEVHGVFDILAEKREAAAQKGLKIYESFEAVLADEKVDAVLIATPNDSHKELA
ITALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHFMVHQNRRWDEDFLIIKEMFEQKTIGEMFHLESRVHGANGIPGD
WRHLKAHGGGMVLDWGVHLLDQLLFLVDSNVKSVSANLSFALGDEVDDGFVTFITFENGITAQIEVGTTNFIKLPRWYVK
GTEGTGIIHDWDLSGEIVKPTALAKTSEPTPIKAGQGLTKTMAPPSEEATNTLSLPAPAKLAPSFYNNFVDVLNNTSEPI
VQNEEVYQVLKLIEAIFEAAETNRTIHSI

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

Organism=Escherichia coli, GI87081947, Length=342, Percent_Identity=27.4853801169591, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1787574, Length=237, Percent_Identity=29.1139240506329, Blast_Score=95, Evalue=7e-21,
Organism=Escherichia coli, GI87082405, Length=254, Percent_Identity=28.740157480315, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI1789848, Length=226, Percent_Identity=28.7610619469027, Blast_Score=73, Evalue=2e-14,
Organism=Drosophila melanogaster, GI24581117, Length=220, Percent_Identity=26.8181818181818, Blast_Score=69, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 38453; Mature: 38453

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKYQLVIIGYGGMGSYHVTLASAANNLEVHGVFDILAEKREAAAQKGLKIYESFEAVLA
CCCEEEEEEEECCCCCEEEEEEECCCCEEEEHHHHHHHHHHHHHHHHCHHHHHHHHHHHC
DEKVDAVLIATPNDSHKELAITALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHFMVH
CCCCCEEEEECCCCCCCEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHEEEE
QNRRWDEDFLIIKEMFEQKTIGEMFHLESRVHGANGIPGDWRHLKAHGGGMVLDWGVHLL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEHHHHHHH
DQLLFLVDSNVKSVSANLSFALGDEVDDGFVTFITFENGITAQIEVGTTNFIKLPRWYVK
HHHHHHHCCCCCEEECCEEEEECCCCCCCEEEEEEECCCCEEEEEECCCCEEECCEEEEE
GTEGTGIIHDWDLSGEIVKPTALAKTSEPTPIKAGQGLTKTMAPPSEEATNTLSLPAPAK
CCCCCCEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHH
LAPSFYNNFVDVLNNTSEPIVQNEEVYQVLKLIEAIFEAAETNRTIHSI
CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEECCC
>Mature Secondary Structure
MKKYQLVIIGYGGMGSYHVTLASAANNLEVHGVFDILAEKREAAAQKGLKIYESFEAVLA
CCCEEEEEEEECCCCCEEEEEEECCCCEEEEHHHHHHHHHHHHHHHHCHHHHHHHHHHHC
DEKVDAVLIATPNDSHKELAITALEAGKHVVCEKPVTMTSEDLLAIMDVAKRVNKHFMVH
CCCCCEEEEECCCCCCCEEEEEEECCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHEEEE
QNRRWDEDFLIIKEMFEQKTIGEMFHLESRVHGANGIPGDWRHLKAHGGGMVLDWGVHLL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCEEEHHHHHHH
DQLLFLVDSNVKSVSANLSFALGDEVDDGFVTFITFENGITAQIEVGTTNFIKLPRWYVK
HHHHHHHCCCCCEEECCEEEEECCCCCCCEEEEEEECCCCEEEEEECCCCEEECCEEEEE
GTEGTGIIHDWDLSGEIVKPTALAKTSEPTPIKAGQGLTKTMAPPSEEATNTLSLPAPAK
CCCCCCEEEECCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCHH
LAPSFYNNFVDVLNNTSEPIVQNEEVYQVLKLIEAIFEAAETNRTIHSI
CCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9097039; 9278503 [H]