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The map label for this gene is yurK [H]

Identifier: 226224602

GI number: 226224602

Start: 2064857

End: 2065588

Strand: Reverse

Name: yurK [H]

Synonym: Lm4b_02016

Alternate gene names: 226224602

Gene position: 2065588-2064857 (Counterclockwise)

Preceding gene: 226224603

Following gene: 226224601

Centisome position: 70.92

GC content: 36.89

Gene sequence:

>732_bases
ATGGAATATAAAGACTTGTCGCCAGCAGTGCAAAGTGAGGAACAACTAAGACAGCTTATCCAAGAAAAAGTAGCAGCCGG
AGAAACAAGTTTCCCATCAGAACGTGCGCTTGAAAACGAACTAGGTGTCAGTAGAACTACACTCAGACGGTCACTTGATA
CCCTTGAAAAAGAAGCGGTCATCCAAAAAAGAAACCGAAAAGGAATCGAAATCAATCAAAAGCAAACAATCAATATATTG
CAAATGAATTCCATGAGCAGCCAATTGCCGGGAGAACAAAAAGTAGAAGTAATGTCACAAGAAATAGTAGCTGGCAAAGA
CGAGGTGAACCACTTTTTAAACTTAAGTGAAGATAAGCCGGTGTTTAAATTGGTTCGGCGAAGAATAGTTGATAATAAGC
CGTTTTCCTATGAAATATCTTTTATTGATAGCACGAGATTTGCTGGTATTGAGAAAATCGATTTAAATAATTCCTCGTTA
TACAATGTGTTAGAAAAGCAGTTTGCTATTAAACCTACCTACGGGCGCGAAGAATTGCGCTTTGTATCAGCGAATGAAAA
GCTAGCAGAAGCATTAAAGGTACCACTAAACACGCCACTTTTTGAAGTAGTAAGTAAAGCATTTGATCAAAATGATGAAC
CTTTTGAGTACAGTAAACAATATCTAATTGGTAATCAAATCAAATACAAAATCAATGCGAAAAACATATTTGATTACTTG
GAGGATGAGTGA

Upstream 100 bases:

>100_bases
AAAATGCAACCGTTTACAATGAAGTGGTATTAAAAATGTTTGAAGCTGTATCTTTTTAAAAAGTGAAATAGATAGATGAT
TTGAAAAAAGAGGTGGAAAT

Downstream 100 bases:

>100_bases
AATGGGAGCTAAAAAGCCACTTTTTGAAGTAATAGCTTCAGAAATAAAAGATAGTATTAATCGCGATGAATATAAGCCGG
GAATGCTAATGCCGAACGAA

Product: transcription regulator GntR family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 243; Mature: 243

Protein sequence:

>243_residues
MEYKDLSPAVQSEEQLRQLIQEKVAAGETSFPSERALENELGVSRTTLRRSLDTLEKEAVIQKRNRKGIEINQKQTINIL
QMNSMSSQLPGEQKVEVMSQEIVAGKDEVNHFLNLSEDKPVFKLVRRRIVDNKPFSYEISFIDSTRFAGIEKIDLNNSSL
YNVLEKQFAIKPTYGREELRFVSANEKLAEALKVPLNTPLFEVVSKAFDQNDEPFEYSKQYLIGNQIKYKINAKNIFDYL
EDE

Sequences:

>Translated_243_residues
MEYKDLSPAVQSEEQLRQLIQEKVAAGETSFPSERALENELGVSRTTLRRSLDTLEKEAVIQKRNRKGIEINQKQTINIL
QMNSMSSQLPGEQKVEVMSQEIVAGKDEVNHFLNLSEDKPVFKLVRRRIVDNKPFSYEISFIDSTRFAGIEKIDLNNSSL
YNVLEKQFAIKPTYGREELRFVSANEKLAEALKVPLNTPLFEVVSKAFDQNDEPFEYSKQYLIGNQIKYKINAKNIFDYL
EDE
>Mature_243_residues
MEYKDLSPAVQSEEQLRQLIQEKVAAGETSFPSERALENELGVSRTTLRRSLDTLEKEAVIQKRNRKGIEINQKQTINIL
QMNSMSSQLPGEQKVEVMSQEIVAGKDEVNHFLNLSEDKPVFKLVRRRIVDNKPFSYEISFIDSTRFAGIEKIDLNNSSL
YNVLEKQFAIKPTYGREELRFVSANEKLAEALKVPLNTPLFEVVSKAFDQNDEPFEYSKQYLIGNQIKYKINAKNIFDYL
EDE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI87082252, Length=227, Percent_Identity=26.8722466960352, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1786950, Length=228, Percent_Identity=23.2456140350877, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1788418, Length=191, Percent_Identity=26.7015706806283, Blast_Score=61, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011663
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF07702 UTRA [H]

EC number: NA

Molecular weight: Translated: 28047; Mature: 28047

Theoretical pI: Translated: 4.99; Mature: 4.99

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEYKDLSPAVQSEEQLRQLIQEKVAAGETSFPSERALENELGVSRTTLRRSLDTLEKEAV
CCCCCCCHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH
IQKRNRKGIEINQKQTINILQMNSMSSQLPGEQKVEVMSQEIVAGKDEVNHFLNLSEDKP
HHHHCCCCCEECCCCEEEEEEECCHHHHCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCH
VFKLVRRRIVDNKPFSYEISFIDSTRFAGIEKIDLNNSSLYNVLEKQFAIKPTYGREELR
HHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCHHHHE
FVSANEKLAEALKVPLNTPLFEVVSKAFDQNDEPFEYSKQYLIGNQIKYKINAKNIFDYL
EECCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEECHHHHHHHH
EDE
CCC
>Mature Secondary Structure
MEYKDLSPAVQSEEQLRQLIQEKVAAGETSFPSERALENELGVSRTTLRRSLDTLEKEAV
CCCCCCCHHHCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHH
IQKRNRKGIEINQKQTINILQMNSMSSQLPGEQKVEVMSQEIVAGKDEVNHFLNLSEDKP
HHHHCCCCCEECCCCEEEEEEECCHHHHCCCHHHHHHHHHHHHCCHHHHHHHHCCCCCCH
VFKLVRRRIVDNKPFSYEISFIDSTRFAGIEKIDLNNSSLYNVLEKQFAIKPTYGREELR
HHHHHHHHHHCCCCCEEEEEEECCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCHHHHE
FVSANEKLAEALKVPLNTPLFEVVSKAFDQNDEPFEYSKQYLIGNQIKYKINAKNIFDYL
EECCCHHHHHHHHCCCCCHHHHHHHHHHCCCCCCHHHHHHHHCCCCEEEEECHHHHHHHH
EDE
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]