| Definition | Listeria monocytogenes Clip81459, complete genome. |
|---|---|
| Accession | NC_012488 |
| Length | 2,912,690 |
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The map label for this gene is dinG
Identifier: 226224503
GI number: 226224503
Start: 1960041
End: 1962827
Strand: Reverse
Name: dinG
Synonym: Lm4b_01916
Alternate gene names: 226224503
Gene position: 1962827-1960041 (Counterclockwise)
Preceding gene: 226224504
Following gene: 226224502
Centisome position: 67.39
GC content: 38.39
Gene sequence:
>2787_bases ATGAAACAGAAACGCTATATAGTCGTCGATTTAGAAACAACAGGAAATCAAGCTTCACGAGAGGACCGAATTATCCAGTT CGCTGCTTGCTTTGTTGAATCAGGAAAACGTCTGGAAACATACACGACATTTTTAAATCCAGAAAAACCGATTCCTGCGT TTATTCAAGAATTAACGGGAATCTCCCCAAAAGACGTTAAAAATGCTCCACTGTTTGAAGATGTCGCACCGATTATCGCG AATTTACTAGAAGATACTATTTTTGTGGCACATAATGTGTCATTTGACTGGACATTTTTAGAACGAGAAATGACGCGTGC AGGAATTTCTCTTGGCAAAATGAAAAAACTCGATACTGTGGAATTAGCTAGAATTATGTATCCGGGCATCGATAGTTATA AACTACAAGACTTGTCCGATGAATTTAATCTTGGGCACGATAAACCGCACCGTGCGGATAGTGATGCGGAAGTGACAGCA GATTTACTACTCCTTCTCTTAGAAAAGCTAGAAAATTTACCACTACCTGTCATTCGTCAAATGACAACGATTTCTGGCAG TCTAAAAAGCTATTTACCAGAGCTCTTATTTGAAATTGAAATGCGAAAAGAGCGAGAAAACAAGCCACTTGATCCAGCAT TCGTAGAACATCGTGGACTAGTTATTCGCAAAAAAGAAGTCGAAAAGCCCACCTATAGTAGAGCAGATTTACTTGAATTT CCTGAAACAGACGAAGCTAAAATGGCACTATTCAAAAAAGCTGGAGCGCCACTTTATGCAAGAAGTGGTCAATTTGAAAT GATGAATTTGGTTTTCCAAGCGATGAAATCAGGAAAACATGCCTTGATTGAAGCGGGAACAGGGATTGGGAAATCGTTAG GTTACTTTTTACCAGCTATTTACCAAGCGAAACAAGCTGAATTACCGGTAGTTATTAGTACATACACCAACTTGCTTCAA GCTCAATTGTTTGAAAAAGATGTGCCACTCTTAACGAAATTAACAGGATTCAAAGTGAAAGCTAGCTTACTAAAAGGGCG CGATCATTATTTGAATTTGTTTAAATTTGAGCAGTTACTTCAAGAAGTCGATACGCAATATGATGTAGTTGTGACGAAGC TTAAATTGCTCGTATGGCTGACGGAAACAACGACTGGTGATATTGATGAAGTGAACCTATCTAGCGGCGGGGAGTTATTC TGGAATCGGATGAAGCACACAGGCTGGTTTTTATCTGAAAAACATGATCCTTGGCTCGCACACGATTTCTATAAATTCAA CATCAAACAAGCCAAAAATGCAGATTTAGTCATTGTTAATCACGCACTACTTTTAAATGACCATTTTTCGGGAAGAGAAA CATTGCCTAAGTATGCTTTTGCAGTAATTGATGAAGCCCATCATTTTGCGGATAGTGCTCGTATGCAAGGAAGTTTTGTT CTGTCTTACCGAAAAATAAAATATTTTTTGAATCAGCTAGGCTCTTTAGAAAAATATTCCCTTCTCACAAGGCTTGCAAT GGCTTTCCCAGAAGCAGACAGTTTATATGATTTAGATATTGCGGCAATGAAGTTAAGTGATGCGGTGGAAGAGTTTTTCG GTCTTCTGAAAATGCAGTTAAACTTCGCGCGTAAAAATTTACAAGAAGTTGTCTTAGTAGAAAACAGCGAAAAAGATGCT TGGAATGACAAGGTTTATTACGCTGCTGAAAAAGTATTACATTTGCTAAAAGAGTCCGAAAAAAATATGGAAACATTGTT AGAACAGGGGAAACAAGAAGAAAATGAACTAGGTGAGGCAGAGAGCGCCTTTTTGGAAGAAATGTATGCTTTTTTACTTG ATTGGAAGAATATGGTAAAACAACTGGAGCAAATGTTGCATAAGAAGTCGCCTATTTTGACCATTTATTTACAAGCTGAC AAAAATCATTCTATTTCTAGCATTCGTCTAAAAGCTGTCTTGATGGAAGTGGAGCCGACACTTGGAAAAGAGTTTTTTGC TAAAAAAGAAAGTGTCATCATGACTTCGGCAACTTTAACCGTAAAAGGGAAGTTTGATTATTTACGGAAAAGTCTCGGTC TGGAAGAAGAACAAATTATGGAAAAACGCATTCCTTCACCGTTTGATTATAAAGAAAATGCGCGAGTGATGATTCCAGAT GATATGCCCCCAATTAAAGACACACCAATTGAGCGATATACCTTGGAACTTGCGAAATATATTCGCCACATAGCAGTGAA AACGAATGGACGGATGCTCGTTCTTTTCACCGCTTCTGATATGTTACAAAAAACGTATTATCATATGAAAAATGAAAAAT CATTAGAAGAGTATGTCCTTCTAGCGCAAGGAGTTTCAGCGGGAAGCGCCGCACGACTGACAAAACAATTCCAAATGTTT GATAAGTCTATTTTGCTTGGTACGACAAGCTTTTGGGAAGGAATTGATATTCCAGGAGAAGACTTGTCATGTCTAGTTAT TGTGAGATTACCATTCGCTCCGATGGATGACCCTTATACAAAAGCACAAATATCCCTTCGCAAAGAACGCGGGGAGAATG CTTTCCAAACCTATTCTCTACCTGAAGCTGTACTGCGATTTAAGCAAGGTTTTGGTCGGTTAATTAGAAGAGAATCCGAC CGCGGAATCGTATTTGTTTTTGATAATCGAGTAGATACGACAAAATTTGGAAAAGCATTTTTAGAGTCAATCCCAAGCGC GCCAATCTTGAAAGGCAAACAGGCGGATTTATTAGAAGAAGTGAGTGAATTCTTTAAGGAAGGTTAA
Upstream 100 bases:
>100_bases ATAATCAGTTCGGGGAGCTTGAGTGGATTTCTGCTCAAGCTACTCGTTTGTTTGCATCGTTATTTTTGAATAAAAGCAGT GAAGGAAAGAGGTGGAGCAG
Downstream 100 bases:
>100_bases ATTTTTCCTGATATGACTTCAAATCTTAGGCCGCTATTGCTATAATGTATCTATGCGAAAATGAAAATGCATATCGCCGG AGGAATTCCGGTAATTTAGA
Product: bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 928; Mature: 928
Protein sequence:
>928_residues MKQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRLETYTTFLNPEKPIPAFIQELTGISPKDVKNAPLFEDVAPIIA NLLEDTIFVAHNVSFDWTFLEREMTRAGISLGKMKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDKPHRADSDAEVTA DLLLLLLEKLENLPLPVIRQMTTISGSLKSYLPELLFEIEMRKERENKPLDPAFVEHRGLVIRKKEVEKPTYSRADLLEF PETDEAKMALFKKAGAPLYARSGQFEMMNLVFQAMKSGKHALIEAGTGIGKSLGYFLPAIYQAKQAELPVVISTYTNLLQ AQLFEKDVPLLTKLTGFKVKASLLKGRDHYLNLFKFEQLLQEVDTQYDVVVTKLKLLVWLTETTTGDIDEVNLSSGGELF WNRMKHTGWFLSEKHDPWLAHDFYKFNIKQAKNADLVIVNHALLLNDHFSGRETLPKYAFAVIDEAHHFADSARMQGSFV LSYRKIKYFLNQLGSLEKYSLLTRLAMAFPEADSLYDLDIAAMKLSDAVEEFFGLLKMQLNFARKNLQEVVLVENSEKDA WNDKVYYAAEKVLHLLKESEKNMETLLEQGKQEENELGEAESAFLEEMYAFLLDWKNMVKQLEQMLHKKSPILTIYLQAD KNHSISSIRLKAVLMEVEPTLGKEFFAKKESVIMTSATLTVKGKFDYLRKSLGLEEEQIMEKRIPSPFDYKENARVMIPD DMPPIKDTPIERYTLELAKYIRHIAVKTNGRMLVLFTASDMLQKTYYHMKNEKSLEEYVLLAQGVSAGSAARLTKQFQMF DKSILLGTTSFWEGIDIPGEDLSCLVIVRLPFAPMDDPYTKAQISLRKERGENAFQTYSLPEAVLRFKQGFGRLIRRESD RGIVFVFDNRVDTTKFGKAFLESIPSAPILKGKQADLLEEVSEFFKEG
Sequences:
>Translated_928_residues MKQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRLETYTTFLNPEKPIPAFIQELTGISPKDVKNAPLFEDVAPIIA NLLEDTIFVAHNVSFDWTFLEREMTRAGISLGKMKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDKPHRADSDAEVTA DLLLLLLEKLENLPLPVIRQMTTISGSLKSYLPELLFEIEMRKERENKPLDPAFVEHRGLVIRKKEVEKPTYSRADLLEF PETDEAKMALFKKAGAPLYARSGQFEMMNLVFQAMKSGKHALIEAGTGIGKSLGYFLPAIYQAKQAELPVVISTYTNLLQ AQLFEKDVPLLTKLTGFKVKASLLKGRDHYLNLFKFEQLLQEVDTQYDVVVTKLKLLVWLTETTTGDIDEVNLSSGGELF WNRMKHTGWFLSEKHDPWLAHDFYKFNIKQAKNADLVIVNHALLLNDHFSGRETLPKYAFAVIDEAHHFADSARMQGSFV LSYRKIKYFLNQLGSLEKYSLLTRLAMAFPEADSLYDLDIAAMKLSDAVEEFFGLLKMQLNFARKNLQEVVLVENSEKDA WNDKVYYAAEKVLHLLKESEKNMETLLEQGKQEENELGEAESAFLEEMYAFLLDWKNMVKQLEQMLHKKSPILTIYLQAD KNHSISSIRLKAVLMEVEPTLGKEFFAKKESVIMTSATLTVKGKFDYLRKSLGLEEEQIMEKRIPSPFDYKENARVMIPD DMPPIKDTPIERYTLELAKYIRHIAVKTNGRMLVLFTASDMLQKTYYHMKNEKSLEEYVLLAQGVSAGSAARLTKQFQMF DKSILLGTTSFWEGIDIPGEDLSCLVIVRLPFAPMDDPYTKAQISLRKERGENAFQTYSLPEAVLRFKQGFGRLIRRESD RGIVFVFDNRVDTTKFGKAFLESIPSAPILKGKQADLLEEVSEFFKEG >Mature_928_residues MKQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRLETYTTFLNPEKPIPAFIQELTGISPKDVKNAPLFEDVAPIIA NLLEDTIFVAHNVSFDWTFLEREMTRAGISLGKMKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDKPHRADSDAEVTA DLLLLLLEKLENLPLPVIRQMTTISGSLKSYLPELLFEIEMRKERENKPLDPAFVEHRGLVIRKKEVEKPTYSRADLLEF PETDEAKMALFKKAGAPLYARSGQFEMMNLVFQAMKSGKHALIEAGTGIGKSLGYFLPAIYQAKQAELPVVISTYTNLLQ AQLFEKDVPLLTKLTGFKVKASLLKGRDHYLNLFKFEQLLQEVDTQYDVVVTKLKLLVWLTETTTGDIDEVNLSSGGELF WNRMKHTGWFLSEKHDPWLAHDFYKFNIKQAKNADLVIVNHALLLNDHFSGRETLPKYAFAVIDEAHHFADSARMQGSFV LSYRKIKYFLNQLGSLEKYSLLTRLAMAFPEADSLYDLDIAAMKLSDAVEEFFGLLKMQLNFARKNLQEVVLVENSEKDA WNDKVYYAAEKVLHLLKESEKNMETLLEQGKQEENELGEAESAFLEEMYAFLLDWKNMVKQLEQMLHKKSPILTIYLQAD KNHSISSIRLKAVLMEVEPTLGKEFFAKKESVIMTSATLTVKGKFDYLRKSLGLEEEQIMEKRIPSPFDYKENARVMIPD DMPPIKDTPIERYTLELAKYIRHIAVKTNGRMLVLFTASDMLQKTYYHMKNEKSLEEYVLLAQGVSAGSAARLTKQFQMF DKSILLGTTSFWEGIDIPGEDLSCLVIVRLPFAPMDDPYTKAQISLRKERGENAFQTYSLPEAVLRFKQGFGRLIRRESD RGIVFVFDNRVDTTKFGKAFLESIPSAPILKGKQADLLEEVSEFFKEG
Specific function: Probable helicase involved in DNA repair and perhaps also replication [H]
COG id: COG1199
COG function: function code KL; Rad3-related DNA helicases
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI1788110, Length=657, Percent_Identity=29.3759512937595, Blast_Score=239, Evalue=5e-64, Organism=Escherichia coli, GI1787018, Length=701, Percent_Identity=25.3922967189729, Blast_Score=144, Evalue=3e-35,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014001 - InterPro: IPR006054 - InterPro: IPR006310 - InterPro: IPR006055 - InterPro: IPR013520 - InterPro: IPR014013 - InterPro: IPR006555 - InterPro: IPR001650 - InterPro: IPR006935 - InterPro: IPR012337 [H]
Pfam domain/function: PF00929 Exonuc_X-T; PF04851 ResIII [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 106157; Mature: 106157
Theoretical pI: Translated: 6.01; Mature: 6.01
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 3.1 %Met (Translated Protein) 3.3 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 3.1 %Met (Mature Protein) 3.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRLETYTTFLNPEKPIPAFIQELTG CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHCCCCCCHHHHHHHHCC ISPKDVKNAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLEREMTRAGISLGKMKKLDTV CCCCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHCCCHHHHCCCHHH ELARIMYPGIDSYKLQDLSDEFNLGHDKPHRADSDAEVTADLLLLLLEKLENLPLPVIRQ HHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHH MTTISGSLKSYLPELLFEIEMRKERENKPLDPAFVEHRGLVIRKKEVEKPTYSRADLLEF HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCEEEEHHHCCCCCCCCHHHHCC PETDEAKMALFKKAGAPLYARSGQFEMMNLVFQAMKSGKHALIEAGTGIGKSLGYFLPAI CCCCHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHH YQAKQAELPVVISTYTNLLQAQLFEKDVPLLTKLTGFKVKASLLKGRDHYLNLFKFEQLL HHHHCCCCCEEHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHH QEVDTQYDVVVTKLKLLVWLTETTTGDIDEVNLSSGGELFWNRMKHTGWFLSEKHDPWLA HHHCCHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCCCEE HDFYKFNIKQAKNADLVIVNHALLLNDHFSGRETLPKYAFAVIDEAHHFADSARMQGSFV CCCEEEEECCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEE LSYRKIKYFLNQLGSLEKYSLLTRLAMAFPEADSLYDLDIAAMKLSDAVEEFFGLLKMQL HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHH NFARKNLQEVVLVENSEKDAWNDKVYYAAEKVLHLLKESEKNMETLLEQGKQEENELGEA HHHHHCHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHH ESAFLEEMYAFLLDWKNMVKQLEQMLHKKSPILTIYLQADKNHSISSIRLKAVLMEVEPT HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHEEHHHHHHHCCCH LGKEFFAKKESVIMTSATLTVKGKFDYLRKSLGLEEEQIMEKRIPSPFDYKENARVMIPD HCHHHHHCCCCEEEEEEEEEEECCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCEEECCC DMPPIKDTPIERYTLELAKYIRHIAVKTNGRMLVLFTASDMLQKTYYHMKNEKSLEEYVL CCCCCCCCCHHHHHHHHHHHHHHHHEECCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHH LAQGVSAGSAARLTKQFQMFDKSILLGTTSFWEGIDIPGEDLSCLVIVRLPFAPMDDPYT HHCCCCCCHHHHHHHHHHHHHHHHEEECCHHHCCCCCCCCCCCEEEEEEECCCCCCCCCC KAQISLRKERGENAFQTYSLPEAVLRFKQGFGRLIRRESDRGIVFVFDNRVDTTKFGKAF HHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHH LESIPSAPILKGKQADLLEEVSEFFKEG HHHCCCCCCCCCCHHHHHHHHHHHHHCC >Mature Secondary Structure MKQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRLETYTTFLNPEKPIPAFIQELTG CCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEHHHHCCCCCCHHHHHHHHCC ISPKDVKNAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLEREMTRAGISLGKMKKLDTV CCCCCCCCCCCHHHHHHHHHHHHHHHEEEEECCCCCHHHHHHHHHHHCCCHHHHCCCHHH ELARIMYPGIDSYKLQDLSDEFNLGHDKPHRADSDAEVTADLLLLLLEKLENLPLPVIRQ HHHHHHCCCCCCCCCCCCCHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHH MTTISGSLKSYLPELLFEIEMRKERENKPLDPAFVEHRGLVIRKKEVEKPTYSRADLLEF HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHCCEEEEHHHCCCCCCCCHHHHCC PETDEAKMALFKKAGAPLYARSGQFEMMNLVFQAMKSGKHALIEAGTGIGKSLGYFLPAI CCCCHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHH YQAKQAELPVVISTYTNLLQAQLFEKDVPLLTKLTGFKVKASLLKGRDHYLNLFKFEQLL HHHHCCCCCEEHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHH QEVDTQYDVVVTKLKLLVWLTETTTGDIDEVNLSSGGELFWNRMKHTGWFLSEKHDPWLA HHHCCHHHHHHHHHHHHEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCEECCCCCCCEE HDFYKFNIKQAKNADLVIVNHALLLNDHFSGRETLPKYAFAVIDEAHHFADSARMQGSFV CCCEEEEECCCCCCCEEEEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCEE LSYRKIKYFLNQLGSLEKYSLLTRLAMAFPEADSLYDLDIAAMKLSDAVEEFFGLLKMQL HHHHHHHHHHHHHCCHHHHHHHHHHHHHCCCCCCEEECHHHHHHHHHHHHHHHHHHHHHH NFARKNLQEVVLVENSEKDAWNDKVYYAAEKVLHLLKESEKNMETLLEQGKQEENELGEA HHHHHCHHEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHH ESAFLEEMYAFLLDWKNMVKQLEQMLHKKSPILTIYLQADKNHSISSIRLKAVLMEVEPT HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHEEHHHHHHHCCCH LGKEFFAKKESVIMTSATLTVKGKFDYLRKSLGLEEEQIMEKRIPSPFDYKENARVMIPD HCHHHHHCCCCEEEEEEEEEEECCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCEEECCC DMPPIKDTPIERYTLELAKYIRHIAVKTNGRMLVLFTASDMLQKTYYHMKNEKSLEEYVL CCCCCCCCCHHHHHHHHHHHHHHHHEECCCCEEEEECCHHHHHHHHHHHCCCCCHHHHHH LAQGVSAGSAARLTKQFQMFDKSILLGTTSFWEGIDIPGEDLSCLVIVRLPFAPMDDPYT HHCCCCCCHHHHHHHHHHHHHHHHEEECCHHHCCCCCCCCCCCEEEEEEECCCCCCCCCC KAQISLRKERGENAFQTYSLPEAVLRFKQGFGRLIRRESDRGIVFVFDNRVDTTKFGKAF HHHHHHHHHCCCCCHHHCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCHHHHHHHH LESIPSAPILKGKQADLLEEVSEFFKEG HHHCCCCCCCCCCHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8760912; 9384377 [H]