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The map label for this gene is panD

Identifier: 226224504

GI number: 226224504

Start: 1962924

End: 1963307

Strand: Reverse

Name: panD

Synonym: Lm4b_01917

Alternate gene names: 226224504

Gene position: 1963307-1962924 (Counterclockwise)

Preceding gene: 226224505

Following gene: 226224503

Centisome position: 67.41

GC content: 35.94

Gene sequence:

>384_bases
ATGTTTAGAACAATGATGAATGGCAAAATTCACCGAGCGACTGTAACAGAAGCCAATCTAAATTATGTTGGAAGTATTAC
GATTGATTCTGCTATTTTAGAAGCAGTGGATATGCTTCCAAACGAAAAAGTTCAAATTGTAAATAACAATAACGGTGCTA
GAATTGAAACCTATATTATCCCAGGTGAGCCAGGAAGTGGTGTGATTTGTCTAAACGGAGCTGCAGCTAGACACGTCCAA
GTTGGCGACGTAGTAATTATTATGAGTTACGGAATGTTTACTACCGAAGAAGCGAAAACACATGAACCCAAAATAGTTGT
TTTAGATGAAAAAAATCATATTGAAATGATTCTTCCAGAAGAAAAAGCGCATACGACTTTATAA

Upstream 100 bases:

>100_bases
AACAGACTGGACCAAAGGAATAATCATTGCAGCGGCAGTAAAATATTCGAAAGCTCGTTTAATTGATAATGAATTAATAA
ATGTGAAGAGGCGGTAAAAA

Downstream 100 bases:

>100_bases
TCAGTTCGGGGAGCTTGAGTGGATTTCTGCTCAAGCTACTCGTTTGTTTGCATCGTTATTTTTGAATAAAAGCAGTGAAG
GAAAGAGGTGGAGCAGATGA

Product: aspartate alpha-decarboxylase

Products: NA

Alternate protein names: Aspartate alpha-decarboxylase [H]

Number of amino acids: Translated: 127; Mature: 127

Protein sequence:

>127_residues
MFRTMMNGKIHRATVTEANLNYVGSITIDSAILEAVDMLPNEKVQIVNNNNGARIETYIIPGEPGSGVICLNGAAARHVQ
VGDVVIIMSYGMFTTEEAKTHEPKIVVLDEKNHIEMILPEEKAHTTL

Sequences:

>Translated_127_residues
MFRTMMNGKIHRATVTEANLNYVGSITIDSAILEAVDMLPNEKVQIVNNNNGARIETYIIPGEPGSGVICLNGAAARHVQ
VGDVVIIMSYGMFTTEEAKTHEPKIVVLDEKNHIEMILPEEKAHTTL
>Mature_127_residues
MFRTMMNGKIHRATVTEANLNYVGSITIDSAILEAVDMLPNEKVQIVNNNNGARIETYIIPGEPGSGVICLNGAAARHVQ
VGDVVIIMSYGMFTTEEAKTHEPKIVVLDEKNHIEMILPEEKAHTTL

Specific function: Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine [H]

COG id: COG0853

COG function: function code H; Aspartate 1-decarboxylase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the panD family [H]

Homologues:

Organism=Escherichia coli, GI1786323, Length=115, Percent_Identity=45.2173913043478, Blast_Score=104, Evalue=1e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009010
- InterPro:   IPR003190
- ProDom:   PD009294 [H]

Pfam domain/function: PF02261 Asp_decarbox [H]

EC number: =4.1.1.11 [H]

Molecular weight: Translated: 13945; Mature: 13945

Theoretical pI: Translated: 5.15; Mature: 5.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
5.5 %Met     (Translated Protein)
6.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
5.5 %Met     (Mature Protein)
6.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFRTMMNGKIHRATVTEANLNYVGSITIDSAILEAVDMLPNEKVQIVNNNNGARIETYII
CCCCCCCCEEEEEEEEECCCEEEEEEEEHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEE
PGEPGSGVICLNGAAARHVQVGDVVIIMSYGMFTTEEAKTHEPKIVVLDEKNHIEMILPE
CCCCCCCEEEECCCCCCEEEECCEEEEEECCCEECCCCCCCCCEEEEEECCCCEEEEECC
EKAHTTL
CCCCCCC
>Mature Secondary Structure
MFRTMMNGKIHRATVTEANLNYVGSITIDSAILEAVDMLPNEKVQIVNNNNGARIETYII
CCCCCCCCEEEEEEEEECCCEEEEEEEEHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEE
PGEPGSGVICLNGAAARHVQVGDVVIIMSYGMFTTEEAKTHEPKIVVLDEKNHIEMILPE
CCCCCCCEEEECCCCCCEEEECCEEEEEECCCEECCCCCCCCCEEEEEECCCCEEEEECC
EKAHTTL
CCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]