| Definition | Listeria monocytogenes Clip81459, complete genome. |
|---|---|
| Accession | NC_012488 |
| Length | 2,912,690 |
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The map label for this gene is yfmR [H]
Identifier: 226224479
GI number: 226224479
Start: 1936731
End: 1938623
Strand: Reverse
Name: yfmR [H]
Synonym: Lm4b_01892
Alternate gene names: 226224479
Gene position: 1938623-1936731 (Counterclockwise)
Preceding gene: 226224480
Following gene: 226224478
Centisome position: 66.56
GC content: 41.1
Gene sequence:
>1893_bases ATGAAACAATTAAAAGTGGAAAATTTAACAAAAACATATGGTGAAAAAAGCCTGTTTGAAAATATCTCGCTAACGATAAC AGAGGGCGAACGTATTGGTTTAATCGGTGTAAATGGTACCGGGAAATCGACGTTATTGCAAATTATTTCTGGTAGTGAAT CTGGGGATAAAGGTACTGTTACGAAAGCAAAAGATTATACGATTGGTTATTTGGCGCAAGATCCTGAATTTAATGAAGAA GATACAGTTCTTTCGGCTGTTTTTGACGGGGATACTGCGGCGCTTCGGGCAATGCGCAAGTACGAAGAAGTGTTACTTGC GATGTCACTTGATGCGGAAAATACCAAATTACACGATGCTTATACAGCCGCCAGCCAAGAAATGGATGCTAGTGCGGCTT GGGATATGAACACAGAAGCGAAAACGATTTTGGAGCGTTTAGGAATTACAGATTTAACCGCGAAAATAAGCGAGCTTTCT GGTGGGCAACGAAAACGGGTAGGTTTGGCGCAAGTCTTAATCGAGACGCCAGATTTACTCATTTTGGACGAGCCTACCAA CCACTTGGATTTTCAGTCAATTCGTTGGTTGGAAGAATATTTAAATCGCTTTAAAGGGGCTGTCTTGCTTGTTACCCATG ATCGTTATTTTCTTGACCGAGTGACAAATCACATGGTGGAGCTCGACCGGGGTTCGGCTTATCGATACGTTGGGAACTAC GAGAAATTCATGGAATCTAAAGCCATTCGGATGGAAAACGAAGTCCGTGAATCTGAGAAAAATAAAAACCTTTATCGTAA GGAACTAGCATGGATGCGTCGCGGTCCTCAAGGTCGCGCCACTAAACAAAATGCCAGACAAGACCGTTTCCACGATTTAG AGAAAAAAGTGAAAACAAAAACCGATGACTCAGAACTGGCGATTGATTTTGTTACTAGTCGTCTTGGAAAAGATGTTTTC GAACTGAAAAACTTGGAAAAACGCTTTGATGAAAAACAAGTATTGCAGGATTTCAGCTTGATTATCCAACCTGGTGAACG CCTTGGTATTACAGGGAACAACGGAACTGGAAAATCGACTTTACTGAACATGTTGGCTGGAAAACTAGCACCAGATGCTG GGGAAGTAGTCACAGGTCAAACCGTACAAATCGGTTACTATACGCAACAAAATGAAGAAATGGACCCGGATATGCGAATG ATTGCTTATTTGCAAGAAGCGGGAGAGCAAGTCACAACTTCTGGTGGCGAAGTAATCAGTGTGAGTGCGATGTTAGAACG ATTTTTATTCCCACCAAATTCCCACGGGAAGAAAATTGGTAGCTTATCAGGTGGAGAAAAACGACGGTTATTCTTACTTC GCATTTTGATGGAACGACCAAATGTCTTATTACTGGATGAGCCGACTAATGACTTAGATACGCAAACATTAACCGTATTA GAAGACTATTTAGAATCATTCAATGGTACCGTAATTACGGTTAGCCATGATAGATATTTCCTCGATAAAGTCGTAAACAA ATTGCTCGTTTTCCGGGCGATTGGTGAAGTAGAAATTTTCTACGGTGAATATAGTGATTATTTGAAAGAGCTGGAGGCTA AAGCAAAACCAGCGAAATCAATGAAAAAAATGGCGAATACTTCGGTCGAAAAGGCAGCACCTGAGAAAAAAGAGAAAGTT AAACTCACCTACCAAGAACAACTCGAGTGGGACGGAATTGAAGATGCCATTAGTGAATTAGAACAAACCATTGAATCGCT TAATGAAACATTGGAACAAACCGGAGCAGACTTTACAAAAGCAGCAGAAATTAGCGAACTCATCACGGCAAAAGAAACGG AGCTCGAACAAATGATGGAACGCTGGGAATTTTTATCACAATACGCGGAATAA
Upstream 100 bases:
>100_bases GGAAGAGCCGCTTTTGGAACTTTTTTCATCTTAAGCAATTGCTATGTTCTATGTTTTCAGCTAGAATAGATAAGGACGAA CAGGAAATGGATGGGACTAA
Downstream 100 bases:
>100_bases GGAGTGCGAACGATGAAACAATATTTGGATTTAGAAAAGTACGTTTTAGAGAATGGAACACAAAAAGGAGATCGCACTGG AACTGGAACAATCAGCACAT
Product: ABC transporter (ATP-binding protein)
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 630; Mature: 630
Protein sequence:
>630_residues MKQLKVENLTKTYGEKSLFENISLTITEGERIGLIGVNGTGKSTLLQIISGSESGDKGTVTKAKDYTIGYLAQDPEFNEE DTVLSAVFDGDTAALRAMRKYEEVLLAMSLDAENTKLHDAYTAASQEMDASAAWDMNTEAKTILERLGITDLTAKISELS GGQRKRVGLAQVLIETPDLLILDEPTNHLDFQSIRWLEEYLNRFKGAVLLVTHDRYFLDRVTNHMVELDRGSAYRYVGNY EKFMESKAIRMENEVRESEKNKNLYRKELAWMRRGPQGRATKQNARQDRFHDLEKKVKTKTDDSELAIDFVTSRLGKDVF ELKNLEKRFDEKQVLQDFSLIIQPGERLGITGNNGTGKSTLLNMLAGKLAPDAGEVVTGQTVQIGYYTQQNEEMDPDMRM IAYLQEAGEQVTTSGGEVISVSAMLERFLFPPNSHGKKIGSLSGGEKRRLFLLRILMERPNVLLLDEPTNDLDTQTLTVL EDYLESFNGTVITVSHDRYFLDKVVNKLLVFRAIGEVEIFYGEYSDYLKELEAKAKPAKSMKKMANTSVEKAAPEKKEKV KLTYQEQLEWDGIEDAISELEQTIESLNETLEQTGADFTKAAEISELITAKETELEQMMERWEFLSQYAE
Sequences:
>Translated_630_residues MKQLKVENLTKTYGEKSLFENISLTITEGERIGLIGVNGTGKSTLLQIISGSESGDKGTVTKAKDYTIGYLAQDPEFNEE DTVLSAVFDGDTAALRAMRKYEEVLLAMSLDAENTKLHDAYTAASQEMDASAAWDMNTEAKTILERLGITDLTAKISELS GGQRKRVGLAQVLIETPDLLILDEPTNHLDFQSIRWLEEYLNRFKGAVLLVTHDRYFLDRVTNHMVELDRGSAYRYVGNY EKFMESKAIRMENEVRESEKNKNLYRKELAWMRRGPQGRATKQNARQDRFHDLEKKVKTKTDDSELAIDFVTSRLGKDVF ELKNLEKRFDEKQVLQDFSLIIQPGERLGITGNNGTGKSTLLNMLAGKLAPDAGEVVTGQTVQIGYYTQQNEEMDPDMRM IAYLQEAGEQVTTSGGEVISVSAMLERFLFPPNSHGKKIGSLSGGEKRRLFLLRILMERPNVLLLDEPTNDLDTQTLTVL EDYLESFNGTVITVSHDRYFLDKVVNKLLVFRAIGEVEIFYGEYSDYLKELEAKAKPAKSMKKMANTSVEKAAPEKKEKV KLTYQEQLEWDGIEDAISELEQTIESLNETLEQTGADFTKAAEISELITAKETELEQMMERWEFLSQYAE >Mature_630_residues MKQLKVENLTKTYGEKSLFENISLTITEGERIGLIGVNGTGKSTLLQIISGSESGDKGTVTKAKDYTIGYLAQDPEFNEE DTVLSAVFDGDTAALRAMRKYEEVLLAMSLDAENTKLHDAYTAASQEMDASAAWDMNTEAKTILERLGITDLTAKISELS GGQRKRVGLAQVLIETPDLLILDEPTNHLDFQSIRWLEEYLNRFKGAVLLVTHDRYFLDRVTNHMVELDRGSAYRYVGNY EKFMESKAIRMENEVRESEKNKNLYRKELAWMRRGPQGRATKQNARQDRFHDLEKKVKTKTDDSELAIDFVTSRLGKDVF ELKNLEKRFDEKQVLQDFSLIIQPGERLGITGNNGTGKSTLLNMLAGKLAPDAGEVVTGQTVQIGYYTQQNEEMDPDMRM IAYLQEAGEQVTTSGGEVISVSAMLERFLFPPNSHGKKIGSLSGGEKRRLFLLRILMERPNVLLLDEPTNDLDTQTLTVL EDYLESFNGTVITVSHDRYFLDKVVNKLLVFRAIGEVEIFYGEYSDYLKELEAKAKPAKSMKKMANTSVEKAAPEKKEKV KLTYQEQLEWDGIEDAISELEQTIESLNETLEQTGADFTKAAEISELITAKETELEQMMERWEFLSQYAE
Specific function: Unknown
COG id: COG0488
COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 2 ABC transporter domains [H]
Homologues:
Organism=Homo sapiens, GI148612853, Length=542, Percent_Identity=30.6273062730627, Blast_Score=220, Evalue=3e-57, Organism=Homo sapiens, GI27881506, Length=518, Percent_Identity=30.5019305019305, Blast_Score=195, Evalue=1e-49, Organism=Homo sapiens, GI10947137, Length=518, Percent_Identity=30.5019305019305, Blast_Score=195, Evalue=1e-49, Organism=Homo sapiens, GI10947135, Length=553, Percent_Identity=29.2947558770344, Blast_Score=176, Evalue=5e-44, Organism=Homo sapiens, GI69354671, Length=553, Percent_Identity=29.2947558770344, Blast_Score=176, Evalue=5e-44, Organism=Homo sapiens, GI42741659, Length=185, Percent_Identity=30.8108108108108, Blast_Score=72, Evalue=1e-12, Organism=Homo sapiens, GI27477115, Length=313, Percent_Identity=23.6421725239617, Blast_Score=70, Evalue=9e-12, Organism=Homo sapiens, GI9961252, Length=184, Percent_Identity=30.9782608695652, Blast_Score=69, Evalue=2e-11, Organism=Homo sapiens, GI4505771, Length=184, Percent_Identity=30.9782608695652, Blast_Score=68, Evalue=2e-11, Organism=Homo sapiens, GI27262624, Length=178, Percent_Identity=26.4044943820225, Blast_Score=67, Evalue=6e-11, Organism=Homo sapiens, GI27262626, Length=178, Percent_Identity=26.4044943820225, Blast_Score=67, Evalue=6e-11, Organism=Escherichia coli, GI2367384, Length=514, Percent_Identity=37.9377431906615, Blast_Score=369, Evalue=1e-103, Organism=Escherichia coli, GI1787182, Length=625, Percent_Identity=32.64, Blast_Score=335, Evalue=6e-93, Organism=Escherichia coli, GI1787041, Length=534, Percent_Identity=34.4569288389513, Blast_Score=283, Evalue=2e-77, Organism=Escherichia coli, GI1789751, Length=591, Percent_Identity=31.6412859560068, Blast_Score=279, Evalue=4e-76, Organism=Escherichia coli, GI1788506, Length=583, Percent_Identity=24.8713550600343, Blast_Score=118, Evalue=1e-27, Organism=Escherichia coli, GI87081782, Length=538, Percent_Identity=25.4646840148699, Blast_Score=104, Evalue=1e-23, Organism=Escherichia coli, GI1788761, Length=243, Percent_Identity=28.3950617283951, Blast_Score=89, Evalue=6e-19, Organism=Escherichia coli, GI1789891, Length=250, Percent_Identity=27.2, Blast_Score=84, Evalue=3e-17, Organism=Escherichia coli, GI1787164, Length=191, Percent_Identity=32.9842931937173, Blast_Score=83, Evalue=6e-17, Organism=Escherichia coli, GI87081791, Length=221, Percent_Identity=31.2217194570136, Blast_Score=82, Evalue=1e-16, Organism=Escherichia coli, GI1786703, Length=231, Percent_Identity=32.034632034632, Blast_Score=81, Evalue=2e-16, Organism=Escherichia coli, GI1789991, Length=495, Percent_Identity=23.4343434343434, Blast_Score=75, Evalue=2e-14, Organism=Escherichia coli, GI1786398, Length=237, Percent_Identity=27.0042194092827, Blast_Score=72, Evalue=8e-14, Organism=Escherichia coli, GI48994997, Length=220, Percent_Identity=25.4545454545455, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI1789963, Length=249, Percent_Identity=27.3092369477912, Blast_Score=70, Evalue=3e-13, Organism=Escherichia coli, GI87081709, Length=200, Percent_Identity=29, Blast_Score=70, Evalue=4e-13, Organism=Escherichia coli, GI1787758, Length=226, Percent_Identity=26.5486725663717, Blast_Score=70, Evalue=5e-13, Organism=Escherichia coli, GI1790467, Length=240, Percent_Identity=26.6666666666667, Blast_Score=70, Evalue=5e-13, Organism=Escherichia coli, GI1789593, Length=230, Percent_Identity=26.5217391304348, Blast_Score=69, Evalue=1e-12, Organism=Escherichia coli, GI1788225, Length=214, Percent_Identity=27.1028037383178, Blast_Score=68, Evalue=1e-12, Organism=Escherichia coli, GI1787029, Length=218, Percent_Identity=28.4403669724771, Blast_Score=68, Evalue=2e-12, Organism=Escherichia coli, GI1789873, Length=198, Percent_Identity=30.3030303030303, Blast_Score=67, Evalue=3e-12, Organism=Escherichia coli, GI1786872, Length=236, Percent_Identity=25.8474576271186, Blast_Score=67, Evalue=5e-12, Organism=Escherichia coli, GI1787500, Length=234, Percent_Identity=23.9316239316239, Blast_Score=63, Evalue=6e-11, Organism=Escherichia coli, GI48994883, Length=247, Percent_Identity=24.6963562753036, Blast_Score=63, Evalue=7e-11, Organism=Escherichia coli, GI1789864, Length=241, Percent_Identity=24.0663900414938, Blast_Score=62, Evalue=8e-11, Organism=Caenorhabditis elegans, GI17559834, Length=562, Percent_Identity=30.4270462633452, Blast_Score=223, Evalue=3e-58, Organism=Caenorhabditis elegans, GI17555318, Length=521, Percent_Identity=29.3666026871401, Blast_Score=202, Evalue=3e-52, Organism=Caenorhabditis elegans, GI17553372, Length=524, Percent_Identity=31.4885496183206, Blast_Score=202, Evalue=4e-52, Organism=Caenorhabditis elegans, GI193202349, Length=221, Percent_Identity=28.5067873303167, Blast_Score=68, Evalue=1e-11, Organism=Caenorhabditis elegans, GI71992290, Length=201, Percent_Identity=25.3731343283582, Blast_Score=67, Evalue=2e-11, Organism=Caenorhabditis elegans, GI71984940, Length=184, Percent_Identity=27.7173913043478, Blast_Score=67, Evalue=2e-11, Organism=Saccharomyces cerevisiae, GI6321121, Length=553, Percent_Identity=31.1030741410488, Blast_Score=205, Evalue=2e-53, Organism=Saccharomyces cerevisiae, GI6320874, Length=526, Percent_Identity=27.7566539923954, Blast_Score=197, Evalue=6e-51, Organism=Saccharomyces cerevisiae, GI6323278, Length=389, Percent_Identity=26.4781491002571, Blast_Score=123, Evalue=7e-29, Organism=Saccharomyces cerevisiae, GI6324314, Length=386, Percent_Identity=25.9067357512953, Blast_Score=121, Evalue=3e-28, Organism=Saccharomyces cerevisiae, GI6325030, Length=384, Percent_Identity=27.34375, Blast_Score=117, Evalue=7e-27, Organism=Drosophila melanogaster, GI24666836, Length=548, Percent_Identity=31.2043795620438, Blast_Score=227, Evalue=2e-59, Organism=Drosophila melanogaster, GI24641342, Length=558, Percent_Identity=30.4659498207885, Blast_Score=211, Evalue=9e-55, Organism=Drosophila melanogaster, GI24642252, Length=556, Percent_Identity=28.7769784172662, Blast_Score=206, Evalue=3e-53, Organism=Drosophila melanogaster, GI18859989, Length=556, Percent_Identity=28.7769784172662, Blast_Score=206, Evalue=3e-53, Organism=Drosophila melanogaster, GI24659289, Length=233, Percent_Identity=26.1802575107296, Blast_Score=71, Evalue=2e-12, Organism=Drosophila melanogaster, GI17136662, Length=192, Percent_Identity=27.0833333333333, Blast_Score=66, Evalue=9e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003439 - InterPro: IPR017871 - InterPro: IPR003593 [H]
Pfam domain/function: PF00005 ABC_tran [H]
EC number: NA
Molecular weight: Translated: 71321; Mature: 71321
Theoretical pI: Translated: 4.65; Mature: 4.65
Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 3.0 %Met (Translated Protein) 3.0 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 3.0 %Met (Mature Protein) 3.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKQLKVENLTKTYGEKSLFENISLTITEGERIGLIGVNGTGKSTLLQIISGSESGDKGTV CCCCCHHHHHHHHCHHHHHCCCEEEEECCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCC TKAKDYTIGYLAQDPEFNEEDTVLSAVFDGDTAALRAMRKYEEVLLAMSLDAENTKLHDA EECCCCEEEEEECCCCCCCCHHEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHH YTAASQEMDASAAWDMNTEAKTILERLGITDLTAKISELSGGQRKRVGLAQVLIETPDLL HHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEE ILDEPTNHLDFQSIRWLEEYLNRFKGAVLLVTHDRYFLDRVTNHMVELDRGSAYRYVGNY EEECCCCCCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHCCCCCCEEEECCCH EKFMESKAIRMENEVRESEKNKNLYRKELAWMRRGPQGRATKQNARQDRFHDLEKKVKTK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC TDDSELAIDFVTSRLGKDVFELKNLEKRFDEKQVLQDFSLIIQPGERLGITGNNGTGKST CCCHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHH LLNMLAGKLAPDAGEVVTGQTVQIGYYTQQNEEMDPDMRMIAYLQEAGEQVTTSGGEVIS HHHHHHHHCCCCCCCEECCCEEEEEEEECCCCCCCHHHHHHHHHHHHCHHEECCCCCEEE VSAMLERFLFPPNSHGKKIGSLSGGEKRRLFLLRILMERPNVLLLDEPTNDLDTQTLTVL HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH EDYLESFNGTVITVSHDRYFLDKVVNKLLVFRAIGEVEIFYGEYSDYLKELEAKAKPAKS HHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHCCHHHH MKKMANTSVEKAAPEKKEKVKLTYQEQLEWDGIEDAISELEQTIESLNETLEQTGADFTK HHHHHCCHHHHCCCCCHHHEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH AAEISELITAKETELEQMMERWEFLSQYAE HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure MKQLKVENLTKTYGEKSLFENISLTITEGERIGLIGVNGTGKSTLLQIISGSESGDKGTV CCCCCHHHHHHHHCHHHHHCCCEEEEECCCEEEEEEECCCCHHHHHHHHCCCCCCCCCCC TKAKDYTIGYLAQDPEFNEEDTVLSAVFDGDTAALRAMRKYEEVLLAMSLDAENTKLHDA EECCCCEEEEEECCCCCCCCHHEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHH YTAASQEMDASAAWDMNTEAKTILERLGITDLTAKISELSGGQRKRVGLAQVLIETPDLL HHHHHHHCCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEE ILDEPTNHLDFQSIRWLEEYLNRFKGAVLLVTHDRYFLDRVTNHMVELDRGSAYRYVGNY EEECCCCCCCHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHHHHHHCCCCCCEEEECCCH EKFMESKAIRMENEVRESEKNKNLYRKELAWMRRGPQGRATKQNARQDRFHDLEKKVKTK HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCC TDDSELAIDFVTSRLGKDVFELKNLEKRFDEKQVLQDFSLIIQPGERLGITGNNGTGKST CCCHHHHHHHHHHHHCHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCEEEECCCCCCCHHH LLNMLAGKLAPDAGEVVTGQTVQIGYYTQQNEEMDPDMRMIAYLQEAGEQVTTSGGEVIS HHHHHHHHCCCCCCCEECCCEEEEEEEECCCCCCCHHHHHHHHHHHHCHHEECCCCCEEE VSAMLERFLFPPNSHGKKIGSLSGGEKRRLFLLRILMERPNVLLLDEPTNDLDTQTLTVL HHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHH EDYLESFNGTVITVSHDRYFLDKVVNKLLVFRAIGEVEIFYGEYSDYLKELEAKAKPAKS HHHHHHHCCEEEEEECCHHHHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHCCHHHH MKKMANTSVEKAAPEKKEKVKLTYQEQLEWDGIEDAISELEQTIESLNETLEQTGADFTK HHHHHCCHHHHCCCCCHHHEEEEHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCHHH AAEISELITAKETELEQMMERWEFLSQYAE HHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9141694; 9384377 [H]