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The map label for this gene is rpoZ

Identifier: 226224429

GI number: 226224429

Start: 1888537

End: 1888743

Strand: Reverse

Name: rpoZ

Synonym: Lm4b_01842b

Alternate gene names: 226224429

Gene position: 1888743-1888537 (Counterclockwise)

Preceding gene: 226224430

Following gene: 226224428

Centisome position: 64.85

GC content: 36.71

Gene sequence:

>207_bases
ATGATGTTATATCCATCAATTGATAATTTATTGTTAAAAATCGACTCAAAATATTCGCTAGTTACAGTGGCCGCTAAACG
CGCACGCTACATGCAACTGGAAAATGATAAAGGCGTATTGCCGAGCTACCAGTCCGACAAATTTGTTGGGAAAGCGTTAG
AAGAAATTCACGCTGGAAAATTAGTTTTACAAAACGACGATAAATAA

Upstream 100 bases:

>100_bases
TTGCAAACGCCGTACAAAAAATCAAAGGCATCGTCGAAACAGAACACTTAAAAACTGAGCGAGTAATTCATCGCTACAAA
AAAATGTTGGAGGGATTACA

Downstream 100 bases:

>100_bases
GCTTAACTGCTCCGCTTTCCTGCGGGGCTTTTTTGTTAGCCACAAGTGCAATAAAAATAAGCTGAAATCTAGTTTCTTCA
TGGTTTTGTCCTGTCTTAAT

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 68; Mature: 68

Protein sequence:

>68_residues
MMLYPSIDNLLLKIDSKYSLVTVAAKRARYMQLENDKGVLPSYQSDKFVGKALEEIHAGKLVLQNDDK

Sequences:

>Translated_68_residues
MMLYPSIDNLLLKIDSKYSLVTVAAKRARYMQLENDKGVLPSYQSDKFVGKALEEIHAGKLVLQNDDK
>Mature_68_residues
MMLYPSIDNLLLKIDSKYSLVTVAAKRARYMQLENDKGVLPSYQSDKFVGKALEEIHAGKLVLQNDDK

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_LISMC (C1KWC5)

Other databases:

- EMBL:   FM242711
- RefSeq:   YP_002758536.1
- ProteinModelPortal:   C1KWC5
- GeneID:   7702629
- GenomeReviews:   FM242711_GR
- OMA:   SKYKLVT
- ProtClustDB:   PRK00392
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 7715; Mature: 7715

Theoretical pI: Translated: 8.90; Mature: 8.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.4 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.4 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMLYPSIDNLLLKIDSKYSLVTVAAKRARYMQLENDKGVLPSYQSDKFVGKALEEIHAGK
CCCCCCCCCEEEEECCCCEEEHHHHHHHHHEEECCCCCCCCCCCCCHHHHHHHHHHCCCE
LVLQNDDK
EEEECCCC
>Mature Secondary Structure
MMLYPSIDNLLLKIDSKYSLVTVAAKRARYMQLENDKGVLPSYQSDKFVGKALEEIHAGK
CCCCCCCCCEEEEECCCCEEEHHHHHHHHHEEECCCCCCCCCCCCCHHHHHHHHHHCCCE
LVLQNDDK
EEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA