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The map label for this gene is ycgR [H]

Identifier: 226223540

GI number: 226223540

Start: 958846

End: 959886

Strand: Direct

Name: ycgR [H]

Synonym: Lm4b_00940

Alternate gene names: 226223540

Gene position: 958846-959886 (Clockwise)

Preceding gene: 226223539

Following gene: 226223541

Centisome position: 32.92

GC content: 39.1

Gene sequence:

>1041_bases
ATGTTTAGTCATCTTCCGGATTCATTCCTCCAAATGAATACCATTTTTATTTCTATTTTGATTGAGGCACTGCCGTTTGT
ATTAATTGGAGTATTTATTGCTGGCTTTATTCAAATGTTTATATCAGAACAATTTATTGCCCGTGTTATTCCCAAAAATA
AATTTCTAGCAGTCATTGTTGGCTCGTTTATTGGTGTATTTTTCCCTTCCTGTGAATGTGGCATTGTTCCTATCGTTCGT
AATTTACTGGCAAAAGGGGTACCGCTTCATGCTGGTATTGCCTTCATGCTTACCGCTCCTATTATCAACCCAGTAGTATT
ATTTTCAACGTATGTTGCATTTGGTAGTACGTGGGAAGTTCCGTTGCTACGTGTTGCGGGAAGTCTTGTAGTAGCTCTCG
TTGTCGGAAATATTATCGCTTATTTTTATAAAGGAACTGGACTCAAAGAGCGCTTTTTAAAATATGAAGCAGCTAGTGAA
AAAGTGGCCGTTCCAGCAACAAATCTAGCGCTTGCTGGTGGTCCTTCTGAAAGTACGACAACTAATTTTCAAGTCCTAAC
AAGCGACGGAGCACTTACAGAAGACGCTCATAAAGGACACGCGCACCACCATCACGGTGAGGAGCACGCGCATACAAAAA
TGACATTGAGTCAAAAAATATGGCATACCGTACAACACGCAGTCGATGAATTCTTCTCTGTAGGTAAATACCTTGTGTTT
GGGGCTTTAATTGCCGCAGCGATGCAAACATACATTAAAACATCCACACTTGTTTCCATAGGTCATGGTCCGATTTTATC
CATCTTACTTATGATGGTTCTTGCCTTTGTATTGTCCCTTTGCTCTGAAGCTGATGCCTTTATTGGCGCTTCTTTCCGTA
GTGTTTTCTCCACACAATCCATCGTTGCATTTTTAGTGTTCGGCCCAATGCTTGATATTAAAAATCTAATGATGATGTTA
GGAGCATTTAAAGCAAAATTTGTCTTATTAATTGTTACTAGTGTAACGATTGTTGTCTTTTTATACGCCTTAGTTATTTA
A

Upstream 100 bases:

>100_bases
CTAAATAAAAAATATAGTCATTTATATTTTACTTGATTTCTGCAAAAGATAGGCTTAGAATCAAATAGTTATTAAAAAGA
GTAAAGAAAGAAGGAATCCC

Downstream 100 bases:

>100_bases
CCGAAAGAAGGTGAAAGTATGTTTCGCGTTTTTATTTTATTTGGATTTGGTTTTTATTTGATGCAGTTACATATTTCTGG
TGATATCAGTAAATATATAA

Product: YcgR protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 346; Mature: 346

Protein sequence:

>346_residues
MFSHLPDSFLQMNTIFISILIEALPFVLIGVFIAGFIQMFISEQFIARVIPKNKFLAVIVGSFIGVFFPSCECGIVPIVR
NLLAKGVPLHAGIAFMLTAPIINPVVLFSTYVAFGSTWEVPLLRVAGSLVVALVVGNIIAYFYKGTGLKERFLKYEAASE
KVAVPATNLALAGGPSESTTTNFQVLTSDGALTEDAHKGHAHHHHGEEHAHTKMTLSQKIWHTVQHAVDEFFSVGKYLVF
GALIAAAMQTYIKTSTLVSIGHGPILSILLMMVLAFVLSLCSEADAFIGASFRSVFSTQSIVAFLVFGPMLDIKNLMMML
GAFKAKFVLLIVTSVTIVVFLYALVI

Sequences:

>Translated_346_residues
MFSHLPDSFLQMNTIFISILIEALPFVLIGVFIAGFIQMFISEQFIARVIPKNKFLAVIVGSFIGVFFPSCECGIVPIVR
NLLAKGVPLHAGIAFMLTAPIINPVVLFSTYVAFGSTWEVPLLRVAGSLVVALVVGNIIAYFYKGTGLKERFLKYEAASE
KVAVPATNLALAGGPSESTTTNFQVLTSDGALTEDAHKGHAHHHHGEEHAHTKMTLSQKIWHTVQHAVDEFFSVGKYLVF
GALIAAAMQTYIKTSTLVSIGHGPILSILLMMVLAFVLSLCSEADAFIGASFRSVFSTQSIVAFLVFGPMLDIKNLMMML
GAFKAKFVLLIVTSVTIVVFLYALVI
>Mature_346_residues
MFSHLPDSFLQMNTIFISILIEALPFVLIGVFIAGFIQMFISEQFIARVIPKNKFLAVIVGSFIGVFFPSCECGIVPIVR
NLLAKGVPLHAGIAFMLTAPIINPVVLFSTYVAFGSTWEVPLLRVAGSLVVALVVGNIIAYFYKGTGLKERFLKYEAASE
KVAVPATNLALAGGPSESTTTNFQVLTSDGALTEDAHKGHAHHHHGEEHAHTKMTLSQKIWHTVQHAVDEFFSVGKYLVF
GALIAAAMQTYIKTSTLVSIGHGPILSILLMMVLAFVLSLCSEADAFIGASFRSVFSTQSIVAFLVFGPMLDIKNLMMML
GAFKAKFVLLIVTSVTIVVFLYALVI

Specific function: Unknown

COG id: COG0701

COG function: function code R; Predicted permeases

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0718 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005524 [H]

Pfam domain/function: PF03773 DUF318 [H]

EC number: NA

Molecular weight: Translated: 37533; Mature: 37533

Theoretical pI: Translated: 8.15; Mature: 8.15

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSHLPDSFLQMNTIFISILIEALPFVLIGVFIAGFIQMFISEQFIARVIPKNKFLAVIV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
GSFIGVFFPSCECGIVPIVRNLLAKGVPLHAGIAFMLTAPIINPVVLFSTYVAFGSTWEV
HHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
PLLRVAGSLVVALVVGNIIAYFYKGTGLKERFLKYEAASEKVAVPATNLALAGGPSESTT
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEECCCCCEEEECCCCCCCC
TNFQVLTSDGALTEDAHKGHAHHHHGEEHAHTKMTLSQKIWHTVQHAVDEFFSVGKYLVF
CCEEEEECCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GALIAAAMQTYIKTSTLVSIGHGPILSILLMMVLAFVLSLCSEADAFIGASFRSVFSTQS
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVAFLVFGPMLDIKNLMMMLGAFKAKFVLLIVTSVTIVVFLYALVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MFSHLPDSFLQMNTIFISILIEALPFVLIGVFIAGFIQMFISEQFIARVIPKNKFLAVIV
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
GSFIGVFFPSCECGIVPIVRNLLAKGVPLHAGIAFMLTAPIINPVVLFSTYVAFGSTWEV
HHHHHHHCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
PLLRVAGSLVVALVVGNIIAYFYKGTGLKERFLKYEAASEKVAVPATNLALAGGPSESTT
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCEECCCCCEEEECCCCCCCC
TNFQVLTSDGALTEDAHKGHAHHHHGEEHAHTKMTLSQKIWHTVQHAVDEFFSVGKYLVF
CCEEEEECCCCCCCCHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GALIAAAMQTYIKTSTLVSIGHGPILSILLMMVLAFVLSLCSEADAFIGASFRSVFSTQS
HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IVAFLVFGPMLDIKNLMMMLGAFKAKFVLLIVTSVTIVVFLYALVI
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969502; 9384377 [H]