| Definition | Listeria monocytogenes Clip81459, complete genome. |
|---|---|
| Accession | NC_012488 |
| Length | 2,912,690 |
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The map label for this gene is licR [H]
Identifier: 226223538
GI number: 226223538
Start: 954963
End: 956861
Strand: Direct
Name: licR [H]
Synonym: Lm4b_00938
Alternate gene names: 226223538
Gene position: 954963-956861 (Clockwise)
Preceding gene: 226223537
Following gene: 226223539
Centisome position: 32.79
GC content: 36.07
Gene sequence:
>1899_bases ATGGATACTCAAAAAGAAATACTAGCTTATTTGCATAAACAGGAAAATAAGTGGGTTACCTCAAATGAGTTAGCAGCTTT TTGCGAGTGTACAACACGAACCATTCGCAACAACATTTCTAAAATAAATGAAGCGACACCGAATTTAATTCGTTCTGCAA AACAAGGCTATCAAATCAACCAGCGTATTCCATTTGAACTTCAGACAGAAAGTGATGTAACAGAACGAAAGTCAAAACTC TTACTCGAATTAATTAAAAACTCTACTAAAGGCGTTGACCTGTTTGAACTTGCGGATATTTTATATATTTCAGAAGTAAC CTTAAAAAAAGACATCCAACAATTAAAAAACGAACTAAAAGAAGCCGATGTCCAAATCGTCACCAGTAAAGACCGAATCA AATTAATCGGAAAAGAACGTGCCAAACGAAAATATATGATTTCCTTGCTATATGAAGAAGGCGGATACCGTGAAAGTATC AAAAGTCGCATTCAAGAAATGATTGAATTTGTTTCTATCGATAAACTGCAAAACATCGTAAAAGAAGTTTTAACGGAAGA ATCCATTACAACCAATCAATATTCGATGATGAACATTGTCTTACATTACGCCATTAGCATCGTCCGAATTCAACAAGGAA ATACACTCATTGAAACCCAAAAAACACTCATCCGAAAACACTCCAAAGAATACGAAATATCGAAAAAAATTGCTAAAATT CTCTCGGAAGAATACCAAATCCATTTTTCAGAGGCAGAGACAAAACAACTCGGACTTTTATATGTTGGCTTGCAAAATGA ACAATCTGCTAATGCCAATCATGGCGAACTGGACCAATTTGTCGATAAAAAAATCATCAAAGCACTTAAAAGCGTGCTCG CCAATGTGGAAGAAACCTATCTCATCGATCTCCAAAATGAGCAACTTTTTATCAAGCTAGCGATTCACGTCCAAAGCCTA TACTATCGCTCACGTTACAAAGCGTACACCAGAAATTTAAGCTTACTTGATATTAAAACGTCTTACCCAGTAACTTTTGA TATTGCTGTTTACATTTCTTCTTTGCTACAAGAAAAACTAGCGATTGACTTTAACGAAGATGAAATTTCTTTTATCGCGC TGCATATCGGCTCTTTTCTAGAAAGTGAAAACCGAGATTATATTCGCTTAGAAATAGGCCTACTTATTGAGGATTATCAC GATTTAAGAACAAATATGCTGAAAAAACTGCGCGCACGATTTGAAAATGAAGCTACCATCAAACTGATAGAAAACGAGGA CTCTGAAGAAAATTTTGATATCATTTTAACAACAAACCGAGATATTGCTCTTGAAAAAGCGGGTTCCATTTTTATTCATC CCTTACTAACGACGAAGGATATCAAGAAAATCAGCAATCGAATCCAAACAAAGAAAAAAATCTTGGAAAATCACTTGCGA GGTCAACAAATTGATCGCTACATCGTTCGTTCCCTCTACGCCAACCAAATTGACCCCTCAGAACTGACACCCGCAAAAAT CAGAGAGCAAATGATTTCTAAAATGGAAAAACAAACCTTCGTCACGCCGGAATTTAAAGAAAAAGTCGAAAAAAGGGAAC GAATGGCGCCAACAAGCTTCCCATCCGGCATTGCTATACCACATTCTATCAAGAATGATGCCCTTCAAAGTGGTGTATCT ATAATGACGCTACAAGAGCCGATTTATTGGAATGACGTCAAAATAAAAATAATTGCTCTCGTCGCCATCAGCAAAAAAGA TGCAACAGAGTTCAATGATTTTTTTGAAAAGTTTGTAGAAATCGTCTCCGAACCGATTAATACTAAACGTTTATCAATGG CCGAAAGTTTCGAGGAGTTCATCCAAAAACTAAAAATGATGATGGAAGAAAGTGAGTAA
Upstream 100 bases:
>100_bases GTCTAATGGGGAAGACTTAGAAGCTTAATGTAACAGAGCGCCAGTTGTGGTAGTTGATAGCTAATACAACTGGCTTTCGA TATATAGGGGGTAACAAAAA
Downstream 100 bases:
>100_bases ATGGCCACACATAAGCCGTGTAATTCTATTTACACGGCTTATAAAGGTTGAAGTGACGATAAAATTACGCTATAATATAA CCATCAAACGAAAAGGAGTG
Product: transcription antiterminator BglG family
Products: NA
Alternate protein names: Putative phosphotransferase enzyme IIB component; Putative PTS system EIIB component; Putative phosphotransferase enzyme IIA component; Putative PTS system EIIA component [H]
Number of amino acids: Translated: 632; Mature: 632
Protein sequence:
>632_residues MDTQKEILAYLHKQENKWVTSNELAAFCECTTRTIRNNISKINEATPNLIRSAKQGYQINQRIPFELQTESDVTERKSKL LLELIKNSTKGVDLFELADILYISEVTLKKDIQQLKNELKEADVQIVTSKDRIKLIGKERAKRKYMISLLYEEGGYRESI KSRIQEMIEFVSIDKLQNIVKEVLTEESITTNQYSMMNIVLHYAISIVRIQQGNTLIETQKTLIRKHSKEYEISKKIAKI LSEEYQIHFSEAETKQLGLLYVGLQNEQSANANHGELDQFVDKKIIKALKSVLANVEETYLIDLQNEQLFIKLAIHVQSL YYRSRYKAYTRNLSLLDIKTSYPVTFDIAVYISSLLQEKLAIDFNEDEISFIALHIGSFLESENRDYIRLEIGLLIEDYH DLRTNMLKKLRARFENEATIKLIENEDSEENFDIILTTNRDIALEKAGSIFIHPLLTTKDIKKISNRIQTKKKILENHLR GQQIDRYIVRSLYANQIDPSELTPAKIREQMISKMEKQTFVTPEFKEKVEKRERMAPTSFPSGIAIPHSIKNDALQSGVS IMTLQEPIYWNDVKIKIIALVAISKKDATEFNDFFEKFVEIVSEPINTKRLSMAESFEEFIQKLKMMMEESE
Sequences:
>Translated_632_residues MDTQKEILAYLHKQENKWVTSNELAAFCECTTRTIRNNISKINEATPNLIRSAKQGYQINQRIPFELQTESDVTERKSKL LLELIKNSTKGVDLFELADILYISEVTLKKDIQQLKNELKEADVQIVTSKDRIKLIGKERAKRKYMISLLYEEGGYRESI KSRIQEMIEFVSIDKLQNIVKEVLTEESITTNQYSMMNIVLHYAISIVRIQQGNTLIETQKTLIRKHSKEYEISKKIAKI LSEEYQIHFSEAETKQLGLLYVGLQNEQSANANHGELDQFVDKKIIKALKSVLANVEETYLIDLQNEQLFIKLAIHVQSL YYRSRYKAYTRNLSLLDIKTSYPVTFDIAVYISSLLQEKLAIDFNEDEISFIALHIGSFLESENRDYIRLEIGLLIEDYH DLRTNMLKKLRARFENEATIKLIENEDSEENFDIILTTNRDIALEKAGSIFIHPLLTTKDIKKISNRIQTKKKILENHLR GQQIDRYIVRSLYANQIDPSELTPAKIREQMISKMEKQTFVTPEFKEKVEKRERMAPTSFPSGIAIPHSIKNDALQSGVS IMTLQEPIYWNDVKIKIIALVAISKKDATEFNDFFEKFVEIVSEPINTKRLSMAESFEEFIQKLKMMMEESE >Mature_632_residues MDTQKEILAYLHKQENKWVTSNELAAFCECTTRTIRNNISKINEATPNLIRSAKQGYQINQRIPFELQTESDVTERKSKL LLELIKNSTKGVDLFELADILYISEVTLKKDIQQLKNELKEADVQIVTSKDRIKLIGKERAKRKYMISLLYEEGGYRESI KSRIQEMIEFVSIDKLQNIVKEVLTEESITTNQYSMMNIVLHYAISIVRIQQGNTLIETQKTLIRKHSKEYEISKKIAKI LSEEYQIHFSEAETKQLGLLYVGLQNEQSANANHGELDQFVDKKIIKALKSVLANVEETYLIDLQNEQLFIKLAIHVQSL YYRSRYKAYTRNLSLLDIKTSYPVTFDIAVYISSLLQEKLAIDFNEDEISFIALHIGSFLESENRDYIRLEIGLLIEDYH DLRTNMLKKLRARFENEATIKLIENEDSEENFDIILTTNRDIALEKAGSIFIHPLLTTKDIKKISNRIQTKKKILENHLR GQQIDRYIVRSLYANQIDPSELTPAKIREQMISKMEKQTFVTPEFKEKVEKRERMAPTSFPSGIAIPHSIKNDALQSGVS IMTLQEPIYWNDVKIKIIALVAISKKDATEFNDFFEKFVEIVSEPINTKRLSMAESFEEFIQKLKMMMEESE
Specific function: Positive regulator of the licABCH operon [H]
COG id: COG3711
COG function: function code K; Transcriptional antiterminator
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 PTS EIIB type-2 domain [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR013196 - InterPro: IPR007737 - InterPro: IPR011608 - InterPro: IPR016152 - InterPro: IPR002178 - InterPro: IPR013011 - InterPro: IPR003501 - InterPro: IPR011991 [H]
Pfam domain/function: PF08279 HTH_11; PF05043 Mga; PF00874 PRD; PF00359 PTS_EIIA_2; PF02302 PTS_IIB [H]
EC number: =2.7.1.69 [H]
Molecular weight: Translated: 73502; Mature: 73502
Theoretical pI: Translated: 6.61; Mature: 6.61
Prosite motif: PS51094 PTS_EIIA_TYPE_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.5 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDTQKEILAYLHKQENKWVTSNELAAFCECTTRTIRNNISKINEATPNLIRSAKQGYQIN CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEEC QRIPFELQTESDVTERKSKLLLELIKNSTKGVDLFELADILYISEVTLKKDIQQLKNELK CCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH EADVQIVTSKDRIKLIGKERAKRKYMISLLYEEGGYRESIKSRIQEMIEFVSIDKLQNIV HCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH KEVLTEESITTNQYSMMNIVLHYAISIVRIQQGNTLIETQKTLIRKHSKEYEISKKIAKI HHHHCCCCCCCCHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHH LSEEYQIHFSEAETKQLGLLYVGLQNEQSANANHGELDQFVDKKIIKALKSVLANVEETY HHHHHEEEECCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEE LIDLQNEQLFIKLAIHVQSLYYRSRYKAYTRNLSLLDIKTSYPVTFDIAVYISSLLQEKL EEEECCCEEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEHHHHHHHHHHHHHH AIDFNEDEISFIALHIGSFLESENRDYIRLEIGLLIEDYHDLRTNMLKKLRARFENEATI CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEE KLIENEDSEENFDIILTTNRDIALEKAGSIFIHPLLTTKDIKKISNRIQTKKKILENHLR EEEECCCCCCCCEEEEECCCCEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHC GQQIDRYIVRSLYANQIDPSELTPAKIREQMISKMEKQTFVTPEFKEKVEKRERMAPTSF HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC PSGIAIPHSIKNDALQSGVSIMTLQEPIYWNDVKIKIIALVAISKKDATEFNDFFEKFVE CCCCCCCCHHHHHHHHCCCEEEEECCCCEECCCEEEEEEEEEECCCCCHHHHHHHHHHHH IVSEPINTKRLSMAESFEEFIQKLKMMMEESE HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC >Mature Secondary Structure MDTQKEILAYLHKQENKWVTSNELAAFCECTTRTIRNNISKINEATPNLIRSAKQGYQIN CCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCEEC QRIPFELQTESDVTERKSKLLLELIKNSTKGVDLFELADILYISEVTLKKDIQQLKNELK CCCCEEECCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH EADVQIVTSKDRIKLIGKERAKRKYMISLLYEEGGYRESIKSRIQEMIEFVSIDKLQNIV HCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH KEVLTEESITTNQYSMMNIVLHYAISIVRIQQGNTLIETQKTLIRKHSKEYEISKKIAKI HHHHCCCCCCCCHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHHHHCCHHHHHHHHHHHH LSEEYQIHFSEAETKQLGLLYVGLQNEQSANANHGELDQFVDKKIIKALKSVLANVEETY HHHHHEEEECCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCEE LIDLQNEQLFIKLAIHVQSLYYRSRYKAYTRNLSLLDIKTSYPVTFDIAVYISSLLQEKL EEEECCCEEEEEEHHHHHHHHHHHHHHHHHCCCEEEEEECCCCEEEHHHHHHHHHHHHHH AIDFNEDEISFIALHIGSFLESENRDYIRLEIGLLIEDYHDLRTNMLKKLRARFENEATI CCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHHCCCCCEE KLIENEDSEENFDIILTTNRDIALEKAGSIFIHPLLTTKDIKKISNRIQTKKKILENHLR EEEECCCCCCCCEEEEECCCCEEEECCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHC GQQIDRYIVRSLYANQIDPSELTPAKIREQMISKMEKQTFVTPEFKEKVEKRERMAPTSF HHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC PSGIAIPHSIKNDALQSGVSIMTLQEPIYWNDVKIKIIALVAISKKDATEFNDFFEKFVE CCCCCCCCHHHHHHHHCCCEEEEECCCCEECCCEEEEEEEEEECCCCCHHHHHHHHHHHH IVSEPINTKRLSMAESFEEFIQKLKMMMEESE HHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8990303; 8969509; 9384377; 10438772 [H]