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The map label for this gene is araQ [H]

Identifier: 226223479

GI number: 226223479

Start: 899818

End: 900651

Strand: Direct

Name: araQ [H]

Synonym: Lm4b_00877

Alternate gene names: 226223479

Gene position: 899818-900651 (Clockwise)

Preceding gene: 226223478

Following gene: 226223480

Centisome position: 30.89

GC content: 37.77

Gene sequence:

>834_bases
ATGGTTGGACATAATAGTAAAGCGGGTAAAATTGTTCGCTATATACTGACAACATTACTTATGCTAGTCATGATTTATCC
TTTTATTTATTTAGTATTAAACTCATTTGCTGCTTGGGATCAGGTAGATAAAAAGTTGATTCCTACAGAATTCACTACTC
GTTCGTGGGATTGGTTATTTGGTAATTCAGTTGTTGCGGCACCGGCGCCGTGGATTCATGCGTTTATTAATACAATTATT
GTTTCCACCATTGCGACAGGCTTGATGTTGCTTTTCGGCCTAATGGTAGGCTACGCACTAGCAAAAGTGGATTTTAAGGG
CAAGAAAATTGTTAATAATGCGATTTTATTTCAAATGTTTTTTCCGGCAATCATCTTGCTGATTCCGCAGTTTTTAATGA
TTACGGACTTTGGTTTATTGGATACCTATGCGGGAATGATTATCCCGACTATGCTTAGCTTATGGGCTGTATTTATGTAT
ACCAACTTTTTCAAAGCGATTCCAGATACATTAATTGAAGCTGCCAAACTGGACGGGGCGAGTGATTTGAAGATTTTGTT
TCGGGTTGTGCTGCCAATGTCTAAATCAATTACGACCGTTATTTTCTTATTCCTTTTCACAGACAGATGGACGAATTTAC
TTTGGGATATGCTTGTAACGAAGAGTGATGGAACGGTCACATTGAATGTGCTAATCTCGCAAATGTTTGGACCATATGCA
ACCTATCCTGGGCCAATGTATGCGGCATCTGTGTTACTAACACTTCCACTTATTATCTTGTTCTTATTCTTCTCGAAGAA
ATTCCAAGAAGGAATGCAATTTACTTTGAAATAA

Upstream 100 bases:

>100_bases
AATTCTGGTTATGCTTCAGCGATTTCTCTAATGGCTGCTACTGTAACATTTGCATCGATTGGTGTTATTAAGAAAATGCT
TGAGAAATGGGGTCAAAGAA

Downstream 100 bases:

>100_bases
AAGGAGCGACTGAACTTGGAATTTTGGCGTCGTAGTGTGTTTTATGAAATTTATATGAAATCATTTCAAGATAGTAATGG
CGATGGTTTAGGTGATTTTA

Product: sugar ABC transporter, permease protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 277; Mature: 277

Protein sequence:

>277_residues
MVGHNSKAGKIVRYILTTLLMLVMIYPFIYLVLNSFAAWDQVDKKLIPTEFTTRSWDWLFGNSVVAAPAPWIHAFINTII
VSTIATGLMLLFGLMVGYALAKVDFKGKKIVNNAILFQMFFPAIILLIPQFLMITDFGLLDTYAGMIIPTMLSLWAVFMY
TNFFKAIPDTLIEAAKLDGASDLKILFRVVLPMSKSITTVIFLFLFTDRWTNLLWDMLVTKSDGTVTLNVLISQMFGPYA
TYPGPMYAASVLLTLPLIILFLFFSKKFQEGMQFTLK

Sequences:

>Translated_277_residues
MVGHNSKAGKIVRYILTTLLMLVMIYPFIYLVLNSFAAWDQVDKKLIPTEFTTRSWDWLFGNSVVAAPAPWIHAFINTII
VSTIATGLMLLFGLMVGYALAKVDFKGKKIVNNAILFQMFFPAIILLIPQFLMITDFGLLDTYAGMIIPTMLSLWAVFMY
TNFFKAIPDTLIEAAKLDGASDLKILFRVVLPMSKSITTVIFLFLFTDRWTNLLWDMLVTKSDGTVTLNVLISQMFGPYA
TYPGPMYAASVLLTLPLIILFLFFSKKFQEGMQFTLK
>Mature_277_residues
MVGHNSKAGKIVRYILTTLLMLVMIYPFIYLVLNSFAAWDQVDKKLIPTEFTTRSWDWLFGNSVVAAPAPWIHAFINTII
VSTIATGLMLLFGLMVGYALAKVDFKGKKIVNNAILFQMFFPAIILLIPQFLMITDFGLLDTYAGMIIPTMLSLWAVFMY
TNFFKAIPDTLIEAAKLDGASDLKILFRVVLPMSKSITTVIFLFLFTDRWTNLLWDMLVTKSDGTVTLNVLISQMFGPYA
TYPGPMYAASVLLTLPLIILFLFFSKKFQEGMQFTLK

Specific function: Part of the binding-protein-dependent transport system for L-arabinose. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=278, Percent_Identity=27.3381294964029, Blast_Score=108, Evalue=3e-25,
Organism=Escherichia coli, GI1789860, Length=216, Percent_Identity=27.7777777777778, Blast_Score=86, Evalue=3e-18,
Organism=Escherichia coli, GI1790464, Length=286, Percent_Identity=26.2237762237762, Blast_Score=78, Evalue=6e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 31315; Mature: 31315

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
5.4 %Met     (Translated Protein)
5.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
5.4 %Met     (Mature Protein)
5.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure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CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9084180; 8969504; 9384377; 10417639 [H]