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The map label for this gene is 226223417

Identifier: 226223417

GI number: 226223417

Start: 828543

End: 829304

Strand: Reverse

Name: 226223417

Synonym: Lm4b_00815

Alternate gene names: NA

Gene position: 829304-828543 (Counterclockwise)

Preceding gene: 226223421

Following gene: 226223416

Centisome position: 28.47

GC content: 35.43

Gene sequence:

>762_bases
ATGACCGCTTATCCACAATTCGATGTTATTTTAAAAGCATTAAATTTGTCTAGCGTAGGAGTAATTATTACAGATCCTGA
GCAAAAAGATAATCCAATTATTTTTGTTAACACTGGTTTTGAAAATATTACCGGCTATGCTAAAGAAGAAGCACTTGGCT
CCAATTGTCACTTTTTACAAGGAGATGATACTGACAAAAAAGAAGTTGCAAAAATCCGTCATGCCATTAACGAAAAATCA
ACTGCGAATGTTTTACTAAAAAATTACCGAAAAGATGGTACTTCTTTTATGAATGAACTTACGATTGAACCGATTTACGA
TGATCATAATCATCTCTATTTTGTTGGCATTCAAAAAGATGTGACGACAGAGCACGACTATCAGCTGGAACTCGAGAAAT
CATTAACAGAAATCGAGAAACTTTCCACGCCAATTGTTCCGATTAAAGAAAACATTTGTGTGTTACCACTGATAGGCTCG
CTAACACATGACCGTTTTCAGCATATGTCTGAATATGTGAGTGAATACATGGACCATGGCAAGGAAGATTATTTGATTAT
GGATCTTTCTGGTTTAGCTGAATTTAATGAAGATGCGGTAATGAATCTTGTGAAGTTCCACGGATTTATGAAATTAACTG
GTGTAGAGCTCATCATCACCGGAATATCGCCAAAATTCGCCATGACATTAATTCGCTACGAAGAAAACCTAGCCAGCTTA
ACTACATACAGCACAATCAAAGAAGCATTACAATTTTACTAA

Upstream 100 bases:

>100_bases
CACTGCTCACATACGATTAATTTCACAAATTATACATTGGGTTTTCATTCATTTGCGTGGTATGATAGAAATGTATTTAC
AAAGGGGGAGAAACACGCAG

Downstream 100 bases:

>100_bases
AAGATATTGCAAAATAGCCCGTTTTCCGTTATTATGGGTAAATAATCAAATATAAACCCTCATCCAAATGGTGAGGTAGA
GGTTGCGAGATGCACTAGTA

Product: hypothetical protein

Products: NA

Alternate protein names: Phototropin homolog [H]

Number of amino acids: Translated: 253; Mature: 252

Protein sequence:

>253_residues
MTAYPQFDVILKALNLSSVGVIITDPEQKDNPIIFVNTGFENITGYAKEEALGSNCHFLQGDDTDKKEVAKIRHAINEKS
TANVLLKNYRKDGTSFMNELTIEPIYDDHNHLYFVGIQKDVTTEHDYQLELEKSLTEIEKLSTPIVPIKENICVLPLIGS
LTHDRFQHMSEYVSEYMDHGKEDYLIMDLSGLAEFNEDAVMNLVKFHGFMKLTGVELIITGISPKFAMTLIRYEENLASL
TTYSTIKEALQFY

Sequences:

>Translated_253_residues
MTAYPQFDVILKALNLSSVGVIITDPEQKDNPIIFVNTGFENITGYAKEEALGSNCHFLQGDDTDKKEVAKIRHAINEKS
TANVLLKNYRKDGTSFMNELTIEPIYDDHNHLYFVGIQKDVTTEHDYQLELEKSLTEIEKLSTPIVPIKENICVLPLIGS
LTHDRFQHMSEYVSEYMDHGKEDYLIMDLSGLAEFNEDAVMNLVKFHGFMKLTGVELIITGISPKFAMTLIRYEENLASL
TTYSTIKEALQFY
>Mature_252_residues
TAYPQFDVILKALNLSSVGVIITDPEQKDNPIIFVNTGFENITGYAKEEALGSNCHFLQGDDTDKKEVAKIRHAINEKST
ANVLLKNYRKDGTSFMNELTIEPIYDDHNHLYFVGIQKDVTTEHDYQLELEKSLTEIEKLSTPIVPIKENICVLPLIGSL
THDRFQHMSEYVSEYMDHGKEDYLIMDLSGLAEFNEDAVMNLVKFHGFMKLTGVELIITGISPKFAMTLIRYEENLASLT
TYSTIKEALQFY

Specific function: Exhibits the same spectroscopical features and blue- light induced photochemistry as plants phototropins, with the reversible formation of a blue-shifted photoproduct, assigned to an FMN-cysteine thiol adduct. Positive regulator in the activation of the g

COG id: COG2202

COG function: function code T; FOG: PAS/PAC domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 STAS domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001610
- InterPro:   IPR000014
- InterPro:   IPR000700
- InterPro:   IPR013767
- InterPro:   IPR002645 [H]

Pfam domain/function: PF00989 PAS; PF01740 STAS [H]

EC number: NA

Molecular weight: Translated: 28801; Mature: 28670

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50801 STAS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTAYPQFDVILKALNLSSVGVIITDPEQKDNPIIFVNTGFENITGYAKEEALGSNCHFLQ
CCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEECCCHHHCCCHHHHHCCCCCEEEC
GDDTDKKEVAKIRHAINEKSTANVLLKNYRKDGTSFMNELTIEPIYDDHNHLYFVGIQKD
CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHCCCCEEECCCCEEEEEEEECC
VTTEHDYQLELEKSLTEIEKLSTPIVPIKENICVLPLIGSLTHDRFQHMSEYVSEYMDHG
CCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCC
KEDYLIMDLSGLAEFNEDAVMNLVKFHGFMKLTGVELIITGISPKFAMTLIRYEENLASL
CCCEEEEEECHHHHCCHHHHHHHHHHHCHHEECCEEEEEECCCHHHHHHHHHHHHHHHHH
TTYSTIKEALQFY
HHHHHHHHHHHCC
>Mature Secondary Structure 
TAYPQFDVILKALNLSSVGVIITDPEQKDNPIIFVNTGFENITGYAKEEALGSNCHFLQ
CCCCHHHHHHHHHCCCCCEEEEECCCCCCCCEEEEECCCHHHCCCHHHHHCCCCCEEEC
GDDTDKKEVAKIRHAINEKSTANVLLKNYRKDGTSFMNELTIEPIYDDHNHLYFVGIQKD
CCCCCHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHCCCCEEECCCCEEEEEEEECC
VTTEHDYQLELEKSLTEIEKLSTPIVPIKENICVLPLIGSLTHDRFQHMSEYVSEYMDHG
CCCCCCEEEEHHHHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHCC
KEDYLIMDLSGLAEFNEDAVMNLVKFHGFMKLTGVELIITGISPKFAMTLIRYEENLASL
CCCEEEEEECHHHHCCHHHHHHHHHHHCHHEECCEEEEEECCCHHHHHHHHHHHHHHHHH
TTYSTIKEALQFY
HHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11679669 [H]