| Definition | Chloroflexus sp. Y-400-fl chromosome, complete genome. |
|---|---|
| Accession | NC_012032 |
| Length | 5,268,950 |
Click here to switch to the map view.
The map label for this gene is yqjQ [H]
Identifier: 222526816
GI number: 222526816
Start: 4465366
End: 4466151
Strand: Reverse
Name: yqjQ [H]
Synonym: Chy400_3591
Alternate gene names: 222526816
Gene position: 4466151-4465366 (Counterclockwise)
Preceding gene: 222526817
Following gene: 222526815
Centisome position: 84.76
GC content: 62.09
Gene sequence:
>786_bases ATGAATGCCTTTGCCGGTCGGGTCGTGCTGCTCACCGGTGCGGGTGGCGGATTGGGGCGAGAGTTTGCCCGCCAGTTACT GGCCGCAGGAGCCGACCTTATCCTCAGCAGCCATAATCCGCAGCGGCTGAAAGCCGCTGCCGAATTTGCCGCCCAGTCGC CCAACCGGTTCGGTCGGATCAGATCGCTGCTGCCGGCTGATCTGAGCGACCCGGCGAGCTGTGACCACCTGGCCGAACAG GTGTTACGGATTGCCCCTGACCTCGATCTGGTCATTCACAATGCGGGGGTCGGGTTGTATGGCCCCCTCGAAGCACTACC GGTCGAGGCGGCTGAACGCCTGCTGCGCATTAACCTGCACGCCCCGATTCGACTGACCGCCAGGCTGCTCCCTGCCTTGC GCAACCGGCCCCGCAGTCAGATCGTTTTTATCTCTTCTATCCTTGGCTGGGCGGCCTTGCCCAACATCAGTGTCTACAGC GCAACCAAATTTGCGCTGCGGGGCTTTGCCGATGGTCTCGCCGCCGACGGCTATTGTGTCAGTACCGTCTACCCATTTTT CACCCAAACCGACATTCTCGAATCACCGCAATACGGCACCACGACCCAACGCCGGGTGCCGGGCTGGATGATCGACCGGC CACGACCGGTGGTGAGAGCCAGTCTTGCCGGCATCGCCGCTCGCCGTCACCACATCTATCCCAGTTGGAAGGCTCGCCTC TACGCCGTTACCGCTGTCGTTGCCCCCAGTGTCTTACCGCCATTCAGCCGTCTGGTTGCAGGATAA
Upstream 100 bases:
>100_bases CTCTGAACCAGTTTCAGCGTCGTCTCAACCGGCTCGAATTAGCCAGCCGGCAGAGCATGAACGAGATCGATAACCTGGCA ACCGACGATGAGGAAAGCGT
Downstream 100 bases:
>100_bases CGGAGCAACCAGACGAAGGCAATCTACCTCAAGCGCAGAACTGGCGAATAGAGCGCTCTGCCGTCTCTCTCGCCAGACTC GCGATGTTTCACAACGTGGT
Product: short-chain dehydrogenase/reductase SDR
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 261; Mature: 261
Protein sequence:
>261_residues MNAFAGRVVLLTGAGGGLGREFARQLLAAGADLILSSHNPQRLKAAAEFAAQSPNRFGRIRSLLPADLSDPASCDHLAEQ VLRIAPDLDLVIHNAGVGLYGPLEALPVEAAERLLRINLHAPIRLTARLLPALRNRPRSQIVFISSILGWAALPNISVYS ATKFALRGFADGLAADGYCVSTVYPFFTQTDILESPQYGTTTQRRVPGWMIDRPRPVVRASLAGIAARRHHIYPSWKARL YAVTAVVAPSVLPPFSRLVAG
Sequences:
>Translated_261_residues MNAFAGRVVLLTGAGGGLGREFARQLLAAGADLILSSHNPQRLKAAAEFAAQSPNRFGRIRSLLPADLSDPASCDHLAEQ VLRIAPDLDLVIHNAGVGLYGPLEALPVEAAERLLRINLHAPIRLTARLLPALRNRPRSQIVFISSILGWAALPNISVYS ATKFALRGFADGLAADGYCVSTVYPFFTQTDILESPQYGTTTQRRVPGWMIDRPRPVVRASLAGIAARRHHIYPSWKARL YAVTAVVAPSVLPPFSRLVAG >Mature_261_residues MNAFAGRVVLLTGAGGGLGREFARQLLAAGADLILSSHNPQRLKAAAEFAAQSPNRFGRIRSLLPADLSDPASCDHLAEQ VLRIAPDLDLVIHNAGVGLYGPLEALPVEAAERLLRINLHAPIRLTARLLPALRNRPRSQIVFISSILGWAALPNISVYS ATKFALRGFADGLAADGYCVSTVYPFFTQTDILESPQYGTTTQRRVPGWMIDRPRPVVRASLAGIAARRHHIYPSWKARL YAVTAVVAPSVLPPFSRLVAG
Specific function: Unknown
COG id: COG0300
COG function: function code R; Short-chain dehydrogenases of various substrate specificities
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the short-chain dehydrogenases/reductases (SDR) family [H]
Homologues:
Organism=Homo sapiens, GI157739938, Length=195, Percent_Identity=33.3333333333333, Blast_Score=97, Evalue=2e-20, Organism=Homo sapiens, GI7706318, Length=201, Percent_Identity=30.3482587064677, Blast_Score=95, Evalue=8e-20, Organism=Homo sapiens, GI20149619, Length=216, Percent_Identity=31.4814814814815, Blast_Score=94, Evalue=1e-19, Organism=Homo sapiens, GI7657478, Length=182, Percent_Identity=32.4175824175824, Blast_Score=87, Evalue=1e-17, Organism=Homo sapiens, GI40807363, Length=241, Percent_Identity=28.6307053941909, Blast_Score=86, Evalue=5e-17, Organism=Homo sapiens, GI210032110, Length=242, Percent_Identity=26.0330578512397, Blast_Score=82, Evalue=5e-16, Organism=Homo sapiens, GI4503817, Length=176, Percent_Identity=28.9772727272727, Blast_Score=78, Evalue=1e-14, Organism=Homo sapiens, GI142976729, Length=238, Percent_Identity=26.890756302521, Blast_Score=72, Evalue=5e-13, Organism=Homo sapiens, GI223718074, Length=215, Percent_Identity=28.8372093023256, Blast_Score=72, Evalue=6e-13, Organism=Homo sapiens, GI32455239, Length=182, Percent_Identity=27.4725274725275, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI5031765, Length=182, Percent_Identity=27.4725274725275, Blast_Score=68, Evalue=8e-12, Organism=Homo sapiens, GI25282469, Length=220, Percent_Identity=26.3636363636364, Blast_Score=67, Evalue=1e-11, Organism=Homo sapiens, GI32483357, Length=175, Percent_Identity=26.2857142857143, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI33667109, Length=202, Percent_Identity=26.7326732673267, Blast_Score=67, Evalue=2e-11, Organism=Homo sapiens, GI310128830, Length=206, Percent_Identity=27.6699029126214, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI310115468, Length=206, Percent_Identity=27.6699029126214, Blast_Score=66, Evalue=2e-11, Organism=Homo sapiens, GI5031737, Length=194, Percent_Identity=27.319587628866, Blast_Score=65, Evalue=5e-11, Organism=Escherichia coli, GI1786701, Length=249, Percent_Identity=28.1124497991968, Blast_Score=81, Evalue=8e-17, Organism=Escherichia coli, GI1787335, Length=196, Percent_Identity=28.0612244897959, Blast_Score=80, Evalue=1e-16, Organism=Escherichia coli, GI87082100, Length=200, Percent_Identity=29, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI1787526, Length=193, Percent_Identity=33.160621761658, Blast_Score=74, Evalue=1e-14, Organism=Escherichia coli, GI2367365, Length=197, Percent_Identity=30.9644670050761, Blast_Score=73, Evalue=2e-14, Organism=Caenorhabditis elegans, GI17567345, Length=206, Percent_Identity=26.6990291262136, Blast_Score=77, Evalue=6e-15, Organism=Caenorhabditis elegans, GI17564282, Length=205, Percent_Identity=27.8048780487805, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17508895, Length=196, Percent_Identity=28.0612244897959, Blast_Score=77, Evalue=1e-14, Organism=Caenorhabditis elegans, GI17560676, Length=191, Percent_Identity=28.2722513089005, Blast_Score=73, Evalue=1e-13, Organism=Caenorhabditis elegans, GI193203117, Length=196, Percent_Identity=27.0408163265306, Blast_Score=73, Evalue=2e-13, Organism=Caenorhabditis elegans, GI193203115, Length=195, Percent_Identity=27.1794871794872, Blast_Score=72, Evalue=3e-13, Organism=Caenorhabditis elegans, GI17570069, Length=173, Percent_Identity=30.635838150289, Blast_Score=70, Evalue=9e-13, Organism=Caenorhabditis elegans, GI71997402, Length=175, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=1e-12, Organism=Caenorhabditis elegans, GI17531453, Length=222, Percent_Identity=27.9279279279279, Blast_Score=69, Evalue=2e-12, Organism=Caenorhabditis elegans, GI17551412, Length=203, Percent_Identity=26.6009852216749, Blast_Score=69, Evalue=3e-12, Organism=Caenorhabditis elegans, GI17565030, Length=196, Percent_Identity=29.5918367346939, Blast_Score=68, Evalue=6e-12, Organism=Caenorhabditis elegans, GI17562904, Length=198, Percent_Identity=25.7575757575758, Blast_Score=67, Evalue=1e-11, Organism=Saccharomyces cerevisiae, GI6323882, Length=175, Percent_Identity=28.5714285714286, Blast_Score=66, Evalue=6e-12, Organism=Drosophila melanogaster, GI21358495, Length=257, Percent_Identity=28.0155642023346, Blast_Score=95, Evalue=5e-20, Organism=Drosophila melanogaster, GI24644339, Length=197, Percent_Identity=32.48730964467, Blast_Score=84, Evalue=8e-17, Organism=Drosophila melanogaster, GI21355631, Length=172, Percent_Identity=27.3255813953488, Blast_Score=80, Evalue=9e-16, Organism=Drosophila melanogaster, GI281364892, Length=205, Percent_Identity=25.3658536585366, Blast_Score=80, Evalue=1e-15, Organism=Drosophila melanogaster, GI28571526, Length=196, Percent_Identity=29.5918367346939, Blast_Score=79, Evalue=3e-15, Organism=Drosophila melanogaster, GI24640492, Length=202, Percent_Identity=26.7326732673267, Blast_Score=78, Evalue=7e-15, Organism=Drosophila melanogaster, GI24643142, Length=171, Percent_Identity=32.1637426900585, Blast_Score=73, Evalue=2e-13, Organism=Drosophila melanogaster, GI21355319, Length=197, Percent_Identity=28.9340101522843, Blast_Score=71, Evalue=6e-13, Organism=Drosophila melanogaster, GI116007236, Length=179, Percent_Identity=27.3743016759777, Blast_Score=67, Evalue=1e-11, Organism=Drosophila melanogaster, GI116007238, Length=172, Percent_Identity=27.906976744186, Blast_Score=67, Evalue=2e-11, Organism=Drosophila melanogaster, GI24647946, Length=182, Percent_Identity=27.4725274725275, Blast_Score=66, Evalue=3e-11, Organism=Drosophila melanogaster, GI45553409, Length=182, Percent_Identity=27.4725274725275, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24647948, Length=182, Percent_Identity=27.4725274725275, Blast_Score=65, Evalue=4e-11, Organism=Drosophila melanogaster, GI24640442, Length=198, Percent_Identity=24.2424242424242, Blast_Score=65, Evalue=5e-11, Organism=Drosophila melanogaster, GI23397609, Length=213, Percent_Identity=28.169014084507, Blast_Score=64, Evalue=7e-11,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR002198 - InterPro: IPR002347 - InterPro: IPR016040 - InterPro: IPR020904 [H]
Pfam domain/function: PF00106 adh_short [H]
EC number: 1.-.-.- [C]
Molecular weight: Translated: 28156; Mature: 28156
Theoretical pI: Translated: 10.84; Mature: 10.84
Prosite motif: PS00061 ADH_SHORT
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.8 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.8 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNAFAGRVVLLTGAGGGLGREFARQLLAAGADLILSSHNPQRLKAAAEFAAQSPNRFGRI CCCCCCEEEEEECCCCCHHHHHHHHHHHCCHHEEECCCCHHHHHHHHHHHHCCCHHHHHH RSLLPADLSDPASCDHLAEQVLRIAPDLDLVIHNAGVGLYGPLEALPVEAAERLLRINLH HHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHCCHHHHHHHHHHCCC APIRLTARLLPALRNRPRSQIVFISSILGWAALPNISVYSATKFALRGFADGLAADGYCV CCHHHHHHHHHHHHCCCCHHEEHHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCCCCEEH STVYPFFTQTDILESPQYGTTTQRRVPGWMIDRPRPVVRASLAGIAARRHHIYPSWKARL HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHH YAVTAVVAPSVLPPFSRLVAG HHHHHHHHCCCCCCHHHHHCC >Mature Secondary Structure MNAFAGRVVLLTGAGGGLGREFARQLLAAGADLILSSHNPQRLKAAAEFAAQSPNRFGRI CCCCCCEEEEEECCCCCHHHHHHHHHHHCCHHEEECCCCHHHHHHHHHHHHCCCHHHHHH RSLLPADLSDPASCDHLAEQVLRIAPDLDLVIHNAGVGLYGPLEALPVEAAERLLRINLH HHHCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHCCHHHHHHHHHHCCC APIRLTARLLPALRNRPRSQIVFISSILGWAALPNISVYSATKFALRGFADGLAADGYCV CCHHHHHHHHHHHHCCCCHHEEHHHHHHHHHHCCCCEEHHHHHHHHHHHHCCCCCCCEEH STVYPFFTQTDILESPQYGTTTQRRVPGWMIDRPRPVVRASLAGIAARRHHIYPSWKARL HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHH YAVTAVVAPSVLPPFSRLVAG HHHHHHHHCCCCCCHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]