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The map label for this gene is pdtaR [H]

Identifier: 222525407

GI number: 222525407

Start: 2730187

End: 2730762

Strand: Direct

Name: pdtaR [H]

Synonym: Chy400_2152

Alternate gene names: 222525407

Gene position: 2730187-2730762 (Clockwise)

Preceding gene: 222525406

Following gene: 222525408

Centisome position: 51.82

GC content: 56.6

Gene sequence:

>576_bases
ATGCCCCAGACGCGACTGGTGATCGCCGACGATGAGTCAATCATCCGCATGAACCTCAAAGAGACTCTCGTCAGTCTTGG
CTATCTGGTGGTTGGCGAAGCCGGTGACGGTGTGAGTGTGATCAATCTCGCCCGCGAGCTGCGCCCCGATCTGGTCTTGA
TGGATATCAAAATGCCGAAACTGGACGGCATTCAAGCTGCTCGCATCTTGACCGAAGAGAAGATTGCGCCGGTGCTGCTG
CTCACGGCCTACTCTGACCGCGATCTGGTCGAGCGGGCCAAAGAAGCCGGTGTCGTGAACTATATTGTCAAGCCCTTCCG
CGAAGCCGAACTGCTACCGGCGATTGAGATTGCCATTGCCCGCTACCAGGAGTTTCTGGAGATGGATCGCCAGGTTGCCG
ATCTGAAAGAGACACTTGAGACGCGCAAACTGGTCGAGCGGGCCAAGGGCATCTTAATGGACACCCAGGGCTTGAAAGAG
GCCGAGGCCTTCCGCAAGATTCAGCAGCTCTCGATGAACACCCGCAAGTCGATGAAGGAGATTGCCCAGGCCATCCTTCT
CGCCCACGAGATTTAA

Upstream 100 bases:

>100_bases
TGATTCGCAAACAGTTGAATGATATACTGCTCGCATCAACGAACGTATATACCTGTCTGCGGAATTGCAGGTTATTACTC
AACATAGAGGAGAAGAGCGT

Downstream 100 bases:

>100_bases
GGTGCCTCTGCGCAACAGGCACTCCCGTCTTGATTATGAGGTGCGGACGACGCAAAGTGGCTATCAATTGCTACAACGGC
TAAGCCGCTTTGCGTCATAC

Product: response regulator receiver and ANTAR domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 191; Mature: 190

Protein sequence:

>191_residues
MPQTRLVIADDESIIRMNLKETLVSLGYLVVGEAGDGVSVINLARELRPDLVLMDIKMPKLDGIQAARILTEEKIAPVLL
LTAYSDRDLVERAKEAGVVNYIVKPFREAELLPAIEIAIARYQEFLEMDRQVADLKETLETRKLVERAKGILMDTQGLKE
AEAFRKIQQLSMNTRKSMKEIAQAILLAHEI

Sequences:

>Translated_191_residues
MPQTRLVIADDESIIRMNLKETLVSLGYLVVGEAGDGVSVINLARELRPDLVLMDIKMPKLDGIQAARILTEEKIAPVLL
LTAYSDRDLVERAKEAGVVNYIVKPFREAELLPAIEIAIARYQEFLEMDRQVADLKETLETRKLVERAKGILMDTQGLKE
AEAFRKIQQLSMNTRKSMKEIAQAILLAHEI
>Mature_190_residues
PQTRLVIADDESIIRMNLKETLVSLGYLVVGEAGDGVSVINLARELRPDLVLMDIKMPKLDGIQAARILTEEKIAPVLLL
TAYSDRDLVERAKEAGVVNYIVKPFREAELLPAIEIAIARYQEFLEMDRQVADLKETLETRKLVERAKGILMDTQGLKEA
EAFRKIQQLSMNTRKSMKEIAQAILLAHEI

Specific function: Member of the two-component regulatory system pdtaR/pdtaS [H]

COG id: COG3707

COG function: function code T; Response regulator with putative antiterminator output domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 response regulatory domain [H]

Homologues:

Organism=Escherichia coli, GI1788550, Length=139, Percent_Identity=31.6546762589928, Blast_Score=77, Evalue=9e-16,
Organism=Escherichia coli, GI1790299, Length=118, Percent_Identity=34.7457627118644, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1786784, Length=166, Percent_Identity=31.9277108433735, Blast_Score=64, Evalue=8e-12,
Organism=Escherichia coli, GI87082052, Length=108, Percent_Identity=32.4074074074074, Blast_Score=62, Evalue=2e-11,
Organism=Escherichia coli, GI1786599, Length=120, Percent_Identity=35, Blast_Score=60, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005561
- InterPro:   IPR011006
- InterPro:   IPR008327
- InterPro:   IPR001789
- InterPro:   IPR011991 [H]

Pfam domain/function: PF03861 ANTAR; PF00072 Response_reg [H]

EC number: NA

Molecular weight: Translated: 21528; Mature: 21396

Theoretical pI: Translated: 5.01; Mature: 5.01

Prosite motif: PS50921 ANTAR ; PS50110 RESPONSE_REGULATORY

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPQTRLVIADDESIIRMNLKETLVSLGYLVVGEAGDGVSVINLARELRPDLVLMDIKMPK
CCCCEEEEECCCHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHCCCEEEEEECCCC
LDGIQAARILTEEKIAPVLLLTAYSDRDLVERAKEAGVVNYIVKPFREAELLPAIEIAIA
CCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
RYQEFLEMDRQVADLKETLETRKLVERAKGILMDTQGLKEAEAFRKIQQLSMNTRKSMKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHHHHHHHHHH
IAQAILLAHEI
HHHHHHHHHCC
>Mature Secondary Structure 
PQTRLVIADDESIIRMNLKETLVSLGYLVVGEAGDGVSVINLARELRPDLVLMDIKMPK
CCCEEEEECCCHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHHHHCCCEEEEEECCCC
LDGIQAARILTEEKIAPVLLLTAYSDRDLVERAKEAGVVNYIVKPFREAELLPAIEIAIA
CCCHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
RYQEFLEMDRQVADLKETLETRKLVERAKGILMDTQGLKEAEAFRKIQQLSMNTRKSMKE
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEECCCCCHHHHHHHHHHHHHHHHHHHHHH
IAQAILLAHEI
HHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]