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The map label for this gene is ssb1 [H]

Identifier: 222524224

GI number: 222524224

Start: 1195865

End: 1196395

Strand: Reverse

Name: ssb1 [H]

Synonym: Chy400_0945

Alternate gene names: 222524224

Gene position: 1196395-1195865 (Counterclockwise)

Preceding gene: 222524225

Following gene: 222524221

Centisome position: 22.71

GC content: 57.63

Gene sequence:

>531_bases
ATGGCGAAGGATTTGAACAAGGTTCAATTGACAGGCCATCTCGGCGCTGATCCTGAGATGCGTTACACCGCACAGGGAAG
CGCAGTTACCACATTCCGGGTGGCGAGCAACCGCACGTGGCGCGATAAAGACGGCAATACACACGAAGAGACCGAGTGGT
TCCGCGTCGTCGCATGGGACAAGCTCGGTGAAATCTGCAATCAATACCTCACCAAAGGTACCCGTGTTTACGTCGAGGGT
CGCCTTCAGACCCGCAAGTGGACGGATCGCGATGGGCAGGATCGCTATACGACTGAGGTGATCGCCCAGGATATGATCAT
TCTCTCCCCCAAAGGTGAGCGTGGGCCAATACCTGATGCTGAACCGGCATACGACGAGCCAATGGACGAGCCGGTGCGGC
GGACACCGCCACCGGTACCACCCACACCTTCACGTTCGGCAACCAGTGCTCCTTCTACCCGACCACCGGTTAGCCGTGCC
CCTGCTCGCAATCAGCCGCAACCTATCGAAGACGAAGATATTCCCTTCTAG

Upstream 100 bases:

>100_bases
ATATGCTATAATTCGCACAATAGTTCGAGATCGTGCGGGAAAGCTCTCGCTCGGTTCGGTACAGTTGGGACGATAACACA
CGAGTAACGAGGAGGGTATC

Downstream 100 bases:

>100_bases
TGCTAGTCTCTGATGCATACGCGGGTGAGGATAATCTCACCCGCGTTGTCGCATCATTTGCAGCCAGCACATTGCCGGTG
ACGCTAGAGTAGCGGCGTGT

Product: single-strand binding protein

Products: NA

Alternate protein names: SSB 1; Helix-destabilizing protein 1 [H]

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MAKDLNKVQLTGHLGADPEMRYTAQGSAVTTFRVASNRTWRDKDGNTHEETEWFRVVAWDKLGEICNQYLTKGTRVYVEG
RLQTRKWTDRDGQDRYTTEVIAQDMIILSPKGERGPIPDAEPAYDEPMDEPVRRTPPPVPPTPSRSATSAPSTRPPVSRA
PARNQPQPIEDEDIPF

Sequences:

>Translated_176_residues
MAKDLNKVQLTGHLGADPEMRYTAQGSAVTTFRVASNRTWRDKDGNTHEETEWFRVVAWDKLGEICNQYLTKGTRVYVEG
RLQTRKWTDRDGQDRYTTEVIAQDMIILSPKGERGPIPDAEPAYDEPMDEPVRRTPPPVPPTPSRSATSAPSTRPPVSRA
PARNQPQPIEDEDIPF
>Mature_175_residues
AKDLNKVQLTGHLGADPEMRYTAQGSAVTTFRVASNRTWRDKDGNTHEETEWFRVVAWDKLGEICNQYLTKGTRVYVEGR
LQTRKWTDRDGQDRYTTEVIAQDMIILSPKGERGPIPDAEPAYDEPMDEPVRRTPPPVPPTPSRSATSAPSTRPPVSRAP
ARNQPQPIEDEDIPF

Specific function: This protein is essential for replication of the chromosome. It is also involved in DNA recombination and repair [H]

COG id: COG0629

COG function: function code L; Single-stranded DNA-binding protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SSB domain [H]

Homologues:

Organism=Homo sapiens, GI4507231, Length=116, Percent_Identity=32.7586206896552, Blast_Score=76, Evalue=1e-14,
Organism=Escherichia coli, GI1790494, Length=178, Percent_Identity=39.8876404494382, Blast_Score=123, Evalue=9e-30,
Organism=Drosophila melanogaster, GI85725234, Length=107, Percent_Identity=33.6448598130841, Blast_Score=68, Evalue=3e-12,
Organism=Drosophila melanogaster, GI24647376, Length=107, Percent_Identity=33.6448598130841, Blast_Score=68, Evalue=3e-12,

Paralogues:

None

Copy number: 1622 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 2,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012340
- InterPro:   IPR016027
- InterPro:   IPR000424
- InterPro:   IPR011344 [H]

Pfam domain/function: PF00436 SSB [H]

EC number: NA

Molecular weight: Translated: 19887; Mature: 19756

Theoretical pI: Translated: 5.37; Mature: 5.37

Prosite motif: PS50935 SSB

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKDLNKVQLTGHLGADPEMRYTAQGSAVTTFRVASNRTWRDKDGNTHEETEWFRVVAWD
CCCCCCEEEEEECCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEHHH
KLGEICNQYLTKGTRVYVEGRLQTRKWTDRDGQDRYTTEVIAQDMIILSPKGERGPIPDA
HHHHHHHHHHCCCCEEEEECCEECCCCCCCCCCCHHHHHHHHCCEEEECCCCCCCCCCCC
EPAYDEPMDEPVRRTPPPVPPTPSRSATSAPSTRPPVSRAPARNQPQPIEDEDIPF
CCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
AKDLNKVQLTGHLGADPEMRYTAQGSAVTTFRVASNRTWRDKDGNTHEETEWFRVVAWD
CCCCCEEEEEECCCCCCCEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEEHHH
KLGEICNQYLTKGTRVYVEGRLQTRKWTDRDGQDRYTTEVIAQDMIILSPKGERGPIPDA
HHHHHHHHHHCCCCEEEEECCEECCCCCCCCCCCHHHHHHHHCCEEEECCCCCCCCCCCC
EPAYDEPMDEPVRRTPPPVPPTPSRSATSAPSTRPPVSRAPARNQPQPIEDEDIPF
CCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12093901 [H]