Definition | Agrobacterium vitis S4 plasmid pAtS4b, complete sequence. |
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Accession | NC_011991 |
Length | 130,435 |
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The map label for this gene is 222109167
Identifier: 222109167
GI number: 222109167
Start: 54838
End: 55782
Strand: Direct
Name: 222109167
Synonym: Avi_9567
Alternate gene names: NA
Gene position: 54838-55782 (Clockwise)
Preceding gene: 222109166
Following gene: 222109170
Centisome position: 42.04
GC content: 61.59
Gene sequence:
>945_bases CTGATGTTTCACACCCCTGTCAACGGCGGGGAGGGCGCTCAGCTCTCCTCGATCCGCCTTCGCGTGTTGTCGCTCGGCGC TGGCGTCCAGTCTACGACGCTCGCACTGATGGCAGCGCATGGCGAGATCGGACCCATGCCCGATTGCGCGATTTTTGCTG ATACCGGTTGGGAGCCGAAAGCCGTCTATGAACATCTCGAATGGCTGATGTCGCCCAACGTCCTGCCGTTCCCGGTTCAT ATCGTATCGGCCGGTAATATCCGCGAGCAACTGATACAGGCGGGCCGCGGCAATCGCTGGGCGTCCATTCCCGCTTTCAC AAAATCCGTGATCCGCTCCGGGACAGAGCTCCCGATCCTGGATGAGGACGACGAGGGCGAGCTGATCGAAATCGGCCGGC GGCAGACGAAGGTCGAGACGGTATCGATCGGCATGCTCAGGAGGCAATGCACGGGCGATTTCAAGATCGTGCCTATCCGG CGAAAGGTGAGAGAGCTTGCCGGACTGACCCGCAAACGGTCCCCGAAATGTGCGGTGGTTGAATCGTTGATAGGCATAAG CCTTGATGAGATCGTGCGTGCCAAGCCAAGCTTCGAGGCGTGGCAAGTGAAGCGTTACCCGTTGATCGAGCAGCGCCTAA AGCGTTGCGACTGCCTGGCTTGGCTGCGCCGGCATGGCTATCCCGAGCCCCCGAAATCCGCCTGTATCGGCTGCCCCTTC CATGACAATCGCCGCTGGCGCGCAATGCGCGATCACGATCCCGAAGCATGGGCCGATGCAGTCGATGTCGATCGGGCAAT CCGCACGGGCCTTCGGGGCATTCGCGGCGAGGTCTACCTGCACCGATCCTGTGTGCCGTTGGAGGATGCCGACCTGTCGA CGGCGGCCGATCACGGCCAACTCGATCTGTGGCCAAACGAATGCGAGGGCATGTGCGGGCTGTGA
Upstream 100 bases:
>100_bases TTGTCTCAGCCGATGCGACGATCATCGAGATCAACGGACCGATCGGCATGATGCGCCGTGACCTCCGGCTCTGGCTGGCC GGTGAGGGTGGGGGGACAGA
Downstream 100 bases:
>100_bases TCAGCCGGATGTTTGAACGACGGTGATGACGCGCGGCTGACCAAACGGAGCGGCCGCGGTTGCTCGAGAACGTGCGTGGT ATCCGTCGTCGCCACCCCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 314; Mature: 314
Protein sequence:
>314_residues MMFHTPVNGGEGAQLSSIRLRVLSLGAGVQSTTLALMAAHGEIGPMPDCAIFADTGWEPKAVYEHLEWLMSPNVLPFPVH IVSAGNIREQLIQAGRGNRWASIPAFTKSVIRSGTELPILDEDDEGELIEIGRRQTKVETVSIGMLRRQCTGDFKIVPIR RKVRELAGLTRKRSPKCAVVESLIGISLDEIVRAKPSFEAWQVKRYPLIEQRLKRCDCLAWLRRHGYPEPPKSACIGCPF HDNRRWRAMRDHDPEAWADAVDVDRAIRTGLRGIRGEVYLHRSCVPLEDADLSTAADHGQLDLWPNECEGMCGL
Sequences:
>Translated_314_residues MMFHTPVNGGEGAQLSSIRLRVLSLGAGVQSTTLALMAAHGEIGPMPDCAIFADTGWEPKAVYEHLEWLMSPNVLPFPVH IVSAGNIREQLIQAGRGNRWASIPAFTKSVIRSGTELPILDEDDEGELIEIGRRQTKVETVSIGMLRRQCTGDFKIVPIR RKVRELAGLTRKRSPKCAVVESLIGISLDEIVRAKPSFEAWQVKRYPLIEQRLKRCDCLAWLRRHGYPEPPKSACIGCPF HDNRRWRAMRDHDPEAWADAVDVDRAIRTGLRGIRGEVYLHRSCVPLEDADLSTAADHGQLDLWPNECEGMCGL >Mature_314_residues MMFHTPVNGGEGAQLSSIRLRVLSLGAGVQSTTLALMAAHGEIGPMPDCAIFADTGWEPKAVYEHLEWLMSPNVLPFPVH IVSAGNIREQLIQAGRGNRWASIPAFTKSVIRSGTELPILDEDDEGELIEIGRRQTKVETVSIGMLRRQCTGDFKIVPIR RKVRELAGLTRKRSPKCAVVESLIGISLDEIVRAKPSFEAWQVKRYPLIEQRLKRCDCLAWLRRHGYPEPPKSACIGCPF HDNRRWRAMRDHDPEAWADAVDVDRAIRTGLRGIRGEVYLHRSCVPLEDADLSTAADHGQLDLWPNECEGMCGL
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 35089; Mature: 35089
Theoretical pI: Translated: 7.46; Mature: 7.46
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.2 %Cys (Translated Protein) 2.5 %Met (Translated Protein) 5.7 %Cys+Met (Translated Protein) 3.2 %Cys (Mature Protein) 2.5 %Met (Mature Protein) 5.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMFHTPVNGGEGAQLSSIRLRVLSLGAGVQSTTLALMAAHGEIGPMPDCAIFADTGWEPK CEEECCCCCCCCCCHHHHEEEEEHHCCCCCHHHHEEEEECCCCCCCCCCEEEECCCCCHH AVYEHLEWLMSPNVLPFPVHIVSAGNIREQLIQAGRGNRWASIPAFTKSVIRSGTELPIL HHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCEE DEDDEGELIEIGRRQTKVETVSIGMLRRQCTGDFKIVPIRRKVRELAGLTRKRSPKCAVV CCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCHHHH ESLIGISLDEIVRAKPSFEAWQVKRYPLIEQRLKRCDCLAWLRRHGYPEPPKSACIGCPF HHHHCCCHHHHHHCCCCCCHHEEECCCHHHHHHHHHHHHHHHHHCCCCCCCHHCEEECCC HDNRRWRAMRDHDPEAWADAVDVDRAIRTGLRGIRGEVYLHRSCVPLEDADLSTAADHGQ CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCC LDLWPNECEGMCGL EECCHHHCCCCCCC >Mature Secondary Structure MMFHTPVNGGEGAQLSSIRLRVLSLGAGVQSTTLALMAAHGEIGPMPDCAIFADTGWEPK CEEECCCCCCCCCCHHHHEEEEEHHCCCCCHHHHEEEEECCCCCCCCCCEEEECCCCCHH AVYEHLEWLMSPNVLPFPVHIVSAGNIREQLIQAGRGNRWASIPAFTKSVIRSGTELPIL HHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCEE DEDDEGELIEIGRRQTKVETVSIGMLRRQCTGDFKIVPIRRKVRELAGLTRKRSPKCAVV CCCCCCCHHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHCCCCCHHHH ESLIGISLDEIVRAKPSFEAWQVKRYPLIEQRLKRCDCLAWLRRHGYPEPPKSACIGCPF HHHHCCCHHHHHHCCCCCCHHEEECCCHHHHHHHHHHHHHHHHHCCCCCCCHHCEEECCC HDNRRWRAMRDHDPEAWADAVDVDRAIRTGLRGIRGEVYLHRSCVPLEDADLSTAADHGQ CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCC LDLWPNECEGMCGL EECCHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA