Definition | Agrobacterium vitis S4 plasmid pAtS4b, complete sequence. |
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Accession | NC_011991 |
Length | 130,435 |
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The map label for this gene is 222109170
Identifier: 222109170
GI number: 222109170
Start: 57378
End: 57695
Strand: Direct
Name: 222109170
Synonym: Avi_9572
Alternate gene names: NA
Gene position: 57378-57695 (Clockwise)
Preceding gene: 222109167
Following gene: 222109171
Centisome position: 43.99
GC content: 63.21
Gene sequence:
>318_bases ATGACAATGGCAACCATCGGCACCTTCACCACCACTGAAAACGGCTTCACAGGCTCGATCCGCACTCTCGCCCTCAACGT CAAGGCCCGGATCGCCCGCGTCGAAAACCCCTCCGAAAAGGGCCCGCACTTCCGCATCTACGCCGGTAATGTCGAGCTGG GAGCCGCCTGGCAGAAGCGCTCCGAGCAAACTGACCGCGACTACCTCTCGGTCAAGCTCGACGACCCGAGCTTCCCGGCT CCGATCTACGCGACGCTCGCCGAGGTCGAAGGCGAAGACGGCTACCAGCTGATCTGGTCCCGCCCGAACCGCGATTGA
Upstream 100 bases:
>100_bases CACTTCGTTTCAGCCCCTCCGGGGTGCGGTCCGATCGTCCCCGGTCTTTGCGACTGCCATCGAGGCCGCGAAGAGCGCGG TCCGAAACCAGCGAAAGGAA
Downstream 100 bases:
>100_bases GGCTCGCCACCGGCCCCGCCACCTGGCGGGGCCATATCCCGCAGGCGAGAAGCGGGAACCACTATCGTCAGATATTAGGG CCGGCCTCCAAGCCACAGGC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 105; Mature: 104
Protein sequence:
>105_residues MTMATIGTFTTTENGFTGSIRTLALNVKARIARVENPSEKGPHFRIYAGNVELGAAWQKRSEQTDRDYLSVKLDDPSFPA PIYATLAEVEGEDGYQLIWSRPNRD
Sequences:
>Translated_105_residues MTMATIGTFTTTENGFTGSIRTLALNVKARIARVENPSEKGPHFRIYAGNVELGAAWQKRSEQTDRDYLSVKLDDPSFPA PIYATLAEVEGEDGYQLIWSRPNRD >Mature_104_residues TMATIGTFTTTENGFTGSIRTLALNVKARIARVENPSEKGPHFRIYAGNVELGAAWQKRSEQTDRDYLSVKLDDPSFPAP IYATLAEVEGEDGYQLIWSRPNRD
Specific function: Unknown
COG id: COG5489
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR007948 [H]
Pfam domain/function: PF05284 DUF736 [H]
EC number: NA
Molecular weight: Translated: 11722; Mature: 11591
Theoretical pI: Translated: 5.13; Mature: 5.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.0 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTMATIGTFTTTENGFTGSIRTLALNVKARIARVENPSEKGPHFRIYAGNVELGAAWQKR CCEEEEEEEEECCCCCCCCEEEEEEEEEEEEEECCCCCCCCCEEEEEECCEEECCCCHHC SEQTDRDYLSVKLDDPSFPAPIYATLAEVEGEDGYQLIWSRPNRD CCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCEEEEEECCCCC >Mature Secondary Structure TMATIGTFTTTENGFTGSIRTLALNVKARIARVENPSEKGPHFRIYAGNVELGAAWQKR CEEEEEEEEECCCCCCCCEEEEEEEEEEEEEECCCCCCCCCEEEEEECCEEECCCCHHC SEQTDRDYLSVKLDDPSFPAPIYATLAEVEGEDGYQLIWSRPNRD CCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCEEEEEECCCCC
PDB accession: NA
Resolution: NA
Structure class: Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]