Definition Agrobacterium vitis S4 plasmid pAtS4b, complete sequence.
Accession NC_011991
Length 130,435

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The map label for this gene is 222109170

Identifier: 222109170

GI number: 222109170

Start: 57378

End: 57695

Strand: Direct

Name: 222109170

Synonym: Avi_9572

Alternate gene names: NA

Gene position: 57378-57695 (Clockwise)

Preceding gene: 222109167

Following gene: 222109171

Centisome position: 43.99

GC content: 63.21

Gene sequence:

>318_bases
ATGACAATGGCAACCATCGGCACCTTCACCACCACTGAAAACGGCTTCACAGGCTCGATCCGCACTCTCGCCCTCAACGT
CAAGGCCCGGATCGCCCGCGTCGAAAACCCCTCCGAAAAGGGCCCGCACTTCCGCATCTACGCCGGTAATGTCGAGCTGG
GAGCCGCCTGGCAGAAGCGCTCCGAGCAAACTGACCGCGACTACCTCTCGGTCAAGCTCGACGACCCGAGCTTCCCGGCT
CCGATCTACGCGACGCTCGCCGAGGTCGAAGGCGAAGACGGCTACCAGCTGATCTGGTCCCGCCCGAACCGCGATTGA

Upstream 100 bases:

>100_bases
CACTTCGTTTCAGCCCCTCCGGGGTGCGGTCCGATCGTCCCCGGTCTTTGCGACTGCCATCGAGGCCGCGAAGAGCGCGG
TCCGAAACCAGCGAAAGGAA

Downstream 100 bases:

>100_bases
GGCTCGCCACCGGCCCCGCCACCTGGCGGGGCCATATCCCGCAGGCGAGAAGCGGGAACCACTATCGTCAGATATTAGGG
CCGGCCTCCAAGCCACAGGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 105; Mature: 104

Protein sequence:

>105_residues
MTMATIGTFTTTENGFTGSIRTLALNVKARIARVENPSEKGPHFRIYAGNVELGAAWQKRSEQTDRDYLSVKLDDPSFPA
PIYATLAEVEGEDGYQLIWSRPNRD

Sequences:

>Translated_105_residues
MTMATIGTFTTTENGFTGSIRTLALNVKARIARVENPSEKGPHFRIYAGNVELGAAWQKRSEQTDRDYLSVKLDDPSFPA
PIYATLAEVEGEDGYQLIWSRPNRD
>Mature_104_residues
TMATIGTFTTTENGFTGSIRTLALNVKARIARVENPSEKGPHFRIYAGNVELGAAWQKRSEQTDRDYLSVKLDDPSFPAP
IYATLAEVEGEDGYQLIWSRPNRD

Specific function: Unknown

COG id: COG5489

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007948 [H]

Pfam domain/function: PF05284 DUF736 [H]

EC number: NA

Molecular weight: Translated: 11722; Mature: 11591

Theoretical pI: Translated: 5.13; Mature: 5.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTMATIGTFTTTENGFTGSIRTLALNVKARIARVENPSEKGPHFRIYAGNVELGAAWQKR
CCEEEEEEEEECCCCCCCCEEEEEEEEEEEEEECCCCCCCCCEEEEEECCEEECCCCHHC
SEQTDRDYLSVKLDDPSFPAPIYATLAEVEGEDGYQLIWSRPNRD
CCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCEEEEEECCCCC
>Mature Secondary Structure 
TMATIGTFTTTENGFTGSIRTLALNVKARIARVENPSEKGPHFRIYAGNVELGAAWQKR
CEEEEEEEEECCCCCCCCEEEEEEEEEEEEEECCCCCCCCCEEEEEECCEEECCCCHHC
SEQTDRDYLSVKLDDPSFPAPIYATLAEVEGEDGYQLIWSRPNRD
CCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCCEEEEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]