Definition | Agrobacterium vitis S4 plasmid pAtS4b, complete sequence. |
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Accession | NC_011991 |
Length | 130,435 |
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The map label for this gene is ardC
Identifier: 222109165
GI number: 222109165
Start: 53364
End: 54290
Strand: Direct
Name: ardC
Synonym: Avi_9564
Alternate gene names: NA
Gene position: 53364-54290 (Clockwise)
Preceding gene: 222109164
Following gene: 222109166
Centisome position: 40.91
GC content: 61.7
Gene sequence:
>927_bases ATGACCAGGAAGAGCGAAAACGAGCGCGCCGATCTTTACACCCGGATCACGGATAAGATCGTGGCGGAGCTTCAACAGGG TGTCCGCCCGTGGATGAGGCCGTGGTCGGCCGCCAACACGACGGGCAGGATCAGCCGTCCTTTGCGGCACAACGGGGAAC CCTATAGCGGGCTGAACGTGCTGTTATTGTGGTCGGAGGGCACGGCGCGGGGCTATTCATCGCCGATGTGGATGACGTTC AAGCAGTCGCTCGATCTGGGCGCCGCCGTTCGCAAGGGCGAAACCGGCACCACTATCATCTATGCCAGCCGCTTCACCAA AACGGAAGCCGACGGCCGCGGCGGCGAGGTCGAGCGCGATATCCCGTTCCTTAAAGCGTACACGGTGTTCAACGTAGCGC AAATCGACGGCCTGCCGGACCATTACCACGTTGCGGCTGAACCGGCGTTGAACCCGGTCGAGAGCATCGCCCATGCGGAT CAGTTCTTCCGCAACACCGGCGCCATCATTCGGCATGGCGGCAATCAGGCTTTCTATTCCCCCGGCAGCGACATCATCCA GATGCCGCCATTCGAAAGCTTCAAGGATCCTGCTGCATATGTGGGGACCCTCAGTCACGAAAGTTGCCATTGGACGGCGC ATCCGGATCGCGTGGGCCGCGATCTCAGCCGATATGCCAAGGATAAGACCGAACGAGCGCGGGAGGAATTGATCGCCGAG CTCGGCAGCTGCTTCCTCTGCGCCGATCTCGGCATCGTACCGGAGCTGGAGCCCAGGCCCGACCATGCCGCCTATCTTCA GTCGTGGCTCTCGGTGCTGTCCGATGACAGGAAGGCGATTTTCCAGGCGGCAGCCCACGCGCAACGGGCGGTGAATTACC TCCATGGTCTGCAGCCGTTGGCCTCTGAAGAGAGGGAGGCAGCCTGA
Upstream 100 bases:
>100_bases TATGCCGGCGGACTGCGGGTGCGCACCTCCTTTTGCCCGTCGCTTTGAGGCCGCCGTAACGGGCCGCATGGGGCGGCCTT GAAACGGAGGTTTTAAGGAA
Downstream 100 bases:
>100_bases TGACCCCGCTCCATTCCTCCTCCCGACTGATCATCCTCGCCTGCTCGGCGACAAAGCGTGCGGAGCCGGACTATATGCCG GCACTCGAGCGCTACGACGG
Product: antirestriction protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 308; Mature: 307
Protein sequence:
>308_residues MTRKSENERADLYTRITDKIVAELQQGVRPWMRPWSAANTTGRISRPLRHNGEPYSGLNVLLLWSEGTARGYSSPMWMTF KQSLDLGAAVRKGETGTTIIYASRFTKTEADGRGGEVERDIPFLKAYTVFNVAQIDGLPDHYHVAAEPALNPVESIAHAD QFFRNTGAIIRHGGNQAFYSPGSDIIQMPPFESFKDPAAYVGTLSHESCHWTAHPDRVGRDLSRYAKDKTERAREELIAE LGSCFLCADLGIVPELEPRPDHAAYLQSWLSVLSDDRKAIFQAAAHAQRAVNYLHGLQPLASEEREAA
Sequences:
>Translated_308_residues MTRKSENERADLYTRITDKIVAELQQGVRPWMRPWSAANTTGRISRPLRHNGEPYSGLNVLLLWSEGTARGYSSPMWMTF KQSLDLGAAVRKGETGTTIIYASRFTKTEADGRGGEVERDIPFLKAYTVFNVAQIDGLPDHYHVAAEPALNPVESIAHAD QFFRNTGAIIRHGGNQAFYSPGSDIIQMPPFESFKDPAAYVGTLSHESCHWTAHPDRVGRDLSRYAKDKTERAREELIAE LGSCFLCADLGIVPELEPRPDHAAYLQSWLSVLSDDRKAIFQAAAHAQRAVNYLHGLQPLASEEREAA >Mature_307_residues TRKSENERADLYTRITDKIVAELQQGVRPWMRPWSAANTTGRISRPLRHNGEPYSGLNVLLLWSEGTARGYSSPMWMTFK QSLDLGAAVRKGETGTTIIYASRFTKTEADGRGGEVERDIPFLKAYTVFNVAQIDGLPDHYHVAAEPALNPVESIAHADQ FFRNTGAIIRHGGNQAFYSPGSDIIQMPPFESFKDPAAYVGTLSHESCHWTAHPDRVGRDLSRYAKDKTERAREELIAEL GSCFLCADLGIVPELEPRPDHAAYLQSWLSVLSDDRKAIFQAAAHAQRAVNYLHGLQPLASEEREAA
Specific function: Unknown
COG id: COG4227
COG function: function code L; Antirestriction protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR017113 - InterPro: IPR013610 [H]
Pfam domain/function: PF08401 DUF1738 [H]
EC number: NA
Molecular weight: Translated: 34311; Mature: 34180
Theoretical pI: Translated: 6.59; Mature: 6.59
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.0 %Cys (Mature Protein) 1.3 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRKSENERADLYTRITDKIVAELQQGVRPWMRPWSAANTTGRISRPLRHNGEPYSGLNV CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCHHCCCCCCCCCEE LLLWSEGTARGYSSPMWMTFKQSLDLGAAVRKGETGTTIIYASRFTKTEADGRGGEVERD EEEECCCCCCCCCCCHHHHHHHHCCHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCC IPFLKAYTVFNVAQIDGLPDHYHVAAEPALNPVESIAHADQFFRNTGAIIRHGGNQAFYS CCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEC PGSDIIQMPPFESFKDPAAYVGTLSHESCHWTAHPDRVGRDLSRYAKDKTERAREELIAE CCCCCEECCCCCCCCCCHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH LGSCFLCADLGIVPELEPRPDHAAYLQSWLSVLSDDRKAIFQAAAHAQRAVNYLHGLQPL HCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHH ASEEREAA HHHHHCCC >Mature Secondary Structure TRKSENERADLYTRITDKIVAELQQGVRPWMRPWSAANTTGRISRPLRHNGEPYSGLNV CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHCCCHHCCCCCCCCCEE LLLWSEGTARGYSSPMWMTFKQSLDLGAAVRKGETGTTIIYASRFTKTEADGRGGEVERD EEEECCCCCCCCCCCHHHHHHHHCCHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCCCCC IPFLKAYTVFNVAQIDGLPDHYHVAAEPALNPVESIAHADQFFRNTGAIIRHGGNQAFYS CCHHHHHHHHHHHHHCCCCCCCEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCEEC PGSDIIQMPPFESFKDPAAYVGTLSHESCHWTAHPDRVGRDLSRYAKDKTERAREELIAE CCCCCEECCCCCCCCCCHHHHCCCCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHH LGSCFLCADLGIVPELEPRPDHAAYLQSWLSVLSDDRKAIFQAAAHAQRAVNYLHGLQPL HCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCHH ASEEREAA HHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 9163424 [H]