Definition Agrobacterium vitis S4 plasmid pAtS4b, complete sequence.
Accession NC_011991
Length 130,435

Click here to switch to the map view.

The map label for this gene is 222109164

Identifier: 222109164

GI number: 222109164

Start: 51766

End: 52245

Strand: Direct

Name: 222109164

Synonym: Avi_9559

Alternate gene names: NA

Gene position: 51766-52245 (Clockwise)

Preceding gene: 222109163

Following gene: 222109165

Centisome position: 39.69

GC content: 63.12

Gene sequence:

>480_bases
ATGACGGAGAACTCGACCACCGAAACAAGCAAGCCCTGGCGCCTGTCCAAAGGACCGATCACCGCAAACGCGTACGACCT
GAAAAAGGCCGAGGCCATCAATGCCCTCCTTGGCTCACCGGCAGGCATCTTGCCGACAAGCGAAAGCGATCCGATCCTGC
CGTTTGCGATCGGGCTGTTCGAGACATTCAAGAGCCGGCTGCGTGACGACGCCACCCCAACGCAGCTTCGTCGCGCGACG
GCCATCTATACCCATGCGAAAAACTACCTCCTCGCCTGCGCGCAGCCGGATTCCATGCGCCACGATATCGACGGGCGACC
CGTCGCGCCCGTCAGCGAGGAGGATCGTCTGTCGAGCCAGCTGCGGTTCGCCGATATCCTGCGCAGCCGCAAGCTGTTGC
AGACAGACGCAAGCGCGCAGGGCGACGATGCTGCATCCAGACAGCCCGAGCCTGCGGCTGCAGACGCGCCGCAGAACTAA

Upstream 100 bases:

>100_bases
GACTTCGGTCCCGCCTTTTCCGCTGGCAGATTATGGCGTCGCCGTTGTTTGTGCTTATATCAGGTGGCAAAGCTTCAGAA
AATAAACACAGGAACAGCGG

Downstream 100 bases:

>100_bases
TCTGTCTCGGAGGCAGCGTGGCTATCTACCATTTGCGCGTTGACAAGATCGGGCGCTCCAAAGGCCAAAGCGCCGTGGCG
TCCGCATCCTATTATGCCGA

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 159; Mature: 158

Protein sequence:

>159_residues
MTENSTTETSKPWRLSKGPITANAYDLKKAEAINALLGSPAGILPTSESDPILPFAIGLFETFKSRLRDDATPTQLRRAT
AIYTHAKNYLLACAQPDSMRHDIDGRPVAPVSEEDRLSSQLRFADILRSRKLLQTDASAQGDDAASRQPEPAAADAPQN

Sequences:

>Translated_159_residues
MTENSTTETSKPWRLSKGPITANAYDLKKAEAINALLGSPAGILPTSESDPILPFAIGLFETFKSRLRDDATPTQLRRAT
AIYTHAKNYLLACAQPDSMRHDIDGRPVAPVSEEDRLSSQLRFADILRSRKLLQTDASAQGDDAASRQPEPAAADAPQN
>Mature_158_residues
TENSTTETSKPWRLSKGPITANAYDLKKAEAINALLGSPAGILPTSESDPILPFAIGLFETFKSRLRDDATPTQLRRATA
IYTHAKNYLLACAQPDSMRHDIDGRPVAPVSEEDRLSSQLRFADILRSRKLLQTDASAQGDDAASRQPEPAAADAPQN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 17276; Mature: 17145

Theoretical pI: Translated: 5.79; Mature: 5.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.6 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTENSTTETSKPWRLSKGPITANAYDLKKAEAINALLGSPAGILPTSESDPILPFAIGLF
CCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
ETFKSRLRDDATPTQLRRATAIYTHAKNYLLACAQPDSMRHDIDGRPVAPVSEEDRLSSQ
HHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH
LRFADILRSRKLLQTDASAQGDDAASRQPEPAAADAPQN
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure 
TENSTTETSKPWRLSKGPITANAYDLKKAEAINALLGSPAGILPTSESDPILPFAIGLF
CCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH
ETFKSRLRDDATPTQLRRATAIYTHAKNYLLACAQPDSMRHDIDGRPVAPVSEEDRLSSQ
HHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH
LRFADILRSRKLLQTDASAQGDDAASRQPEPAAADAPQN
HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA