Definition | Agrobacterium vitis S4 plasmid pAtS4b, complete sequence. |
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Accession | NC_011991 |
Length | 130,435 |
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The map label for this gene is 222109164
Identifier: 222109164
GI number: 222109164
Start: 51766
End: 52245
Strand: Direct
Name: 222109164
Synonym: Avi_9559
Alternate gene names: NA
Gene position: 51766-52245 (Clockwise)
Preceding gene: 222109163
Following gene: 222109165
Centisome position: 39.69
GC content: 63.12
Gene sequence:
>480_bases ATGACGGAGAACTCGACCACCGAAACAAGCAAGCCCTGGCGCCTGTCCAAAGGACCGATCACCGCAAACGCGTACGACCT GAAAAAGGCCGAGGCCATCAATGCCCTCCTTGGCTCACCGGCAGGCATCTTGCCGACAAGCGAAAGCGATCCGATCCTGC CGTTTGCGATCGGGCTGTTCGAGACATTCAAGAGCCGGCTGCGTGACGACGCCACCCCAACGCAGCTTCGTCGCGCGACG GCCATCTATACCCATGCGAAAAACTACCTCCTCGCCTGCGCGCAGCCGGATTCCATGCGCCACGATATCGACGGGCGACC CGTCGCGCCCGTCAGCGAGGAGGATCGTCTGTCGAGCCAGCTGCGGTTCGCCGATATCCTGCGCAGCCGCAAGCTGTTGC AGACAGACGCAAGCGCGCAGGGCGACGATGCTGCATCCAGACAGCCCGAGCCTGCGGCTGCAGACGCGCCGCAGAACTAA
Upstream 100 bases:
>100_bases GACTTCGGTCCCGCCTTTTCCGCTGGCAGATTATGGCGTCGCCGTTGTTTGTGCTTATATCAGGTGGCAAAGCTTCAGAA AATAAACACAGGAACAGCGG
Downstream 100 bases:
>100_bases TCTGTCTCGGAGGCAGCGTGGCTATCTACCATTTGCGCGTTGACAAGATCGGGCGCTCCAAAGGCCAAAGCGCCGTGGCG TCCGCATCCTATTATGCCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 159; Mature: 158
Protein sequence:
>159_residues MTENSTTETSKPWRLSKGPITANAYDLKKAEAINALLGSPAGILPTSESDPILPFAIGLFETFKSRLRDDATPTQLRRAT AIYTHAKNYLLACAQPDSMRHDIDGRPVAPVSEEDRLSSQLRFADILRSRKLLQTDASAQGDDAASRQPEPAAADAPQN
Sequences:
>Translated_159_residues MTENSTTETSKPWRLSKGPITANAYDLKKAEAINALLGSPAGILPTSESDPILPFAIGLFETFKSRLRDDATPTQLRRAT AIYTHAKNYLLACAQPDSMRHDIDGRPVAPVSEEDRLSSQLRFADILRSRKLLQTDASAQGDDAASRQPEPAAADAPQN >Mature_158_residues TENSTTETSKPWRLSKGPITANAYDLKKAEAINALLGSPAGILPTSESDPILPFAIGLFETFKSRLRDDATPTQLRRATA IYTHAKNYLLACAQPDSMRHDIDGRPVAPVSEEDRLSSQLRFADILRSRKLLQTDASAQGDDAASRQPEPAAADAPQN
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 17276; Mature: 17145
Theoretical pI: Translated: 5.79; Mature: 5.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.6 %Cys (Translated Protein) 1.3 %Met (Translated Protein) 1.9 %Cys+Met (Translated Protein) 0.6 %Cys (Mature Protein) 0.6 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTENSTTETSKPWRLSKGPITANAYDLKKAEAINALLGSPAGILPTSESDPILPFAIGLF CCCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH ETFKSRLRDDATPTQLRRATAIYTHAKNYLLACAQPDSMRHDIDGRPVAPVSEEDRLSSQ HHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH LRFADILRSRKLLQTDASAQGDDAASRQPEPAAADAPQN HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure TENSTTETSKPWRLSKGPITANAYDLKKAEAINALLGSPAGILPTSESDPILPFAIGLF CCCCCCCCCCCEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHH ETFKSRLRDDATPTQLRRATAIYTHAKNYLLACAQPDSMRHDIDGRPVAPVSEEDRLSSQ HHHHHHHCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHH LRFADILRSRKLLQTDASAQGDDAASRQPEPAAADAPQN HHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA