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The map label for this gene is ycjC [C]

Identifier: 222109146

GI number: 222109146

Start: 36246

End: 36512

Strand: Reverse

Name: ycjC [C]

Synonym: Avi_9535

Alternate gene names: 222109146

Gene position: 36512-36246 (Counterclockwise)

Preceding gene: 222109152

Following gene: 222109145

Centisome position: 27.99

GC content: 54.68

Gene sequence:

>267_bases
ATGATATCCCCACGTGAACTGCTGGCCTGGAATGTGAAGAAACTACGTGTCGCGAAAGGAATGTCGCAGGAGCGCCTTTC
TCTCGAAGCTCATCTAGAGCGGGTTGCGATATCGCAGATAGAGCGCAGACGGATCAATCCTGGCCTCGATTCACTCGGAA
AAATCGCACAGGCTCTCGGCGTTCCTATTACGGATCTGTTCAAAGAGCCCATGAAAGGCGAACTGGAGCCGGCCAACTTG
CGGCCAGGGCGACGGAATTCGACCTGA

Upstream 100 bases:

>100_bases
TCAGAGATCGTTGGCCTTGATATGAAGCCGGACCAGCTTCGGCGATATCCGTATTGAATCGCCAGTTATTTAATTGACTA
CCGAATGTTCATGTGGGTAC

Downstream 100 bases:

>100_bases
TTCGCCAGTTGAACTCAGTTCTCGTGAGGACAGCATATGAAAGATGAGCCGCATGCAGTCGATGTCGCCGTCGGTCGCGC
CATCCGGAAGAGGCGCATGA

Product: hypothetical transcription regulator protein

Products: NA

Alternate protein names: XRE Family Transcriptional Regulator; Transcription Regulator Protein

Number of amino acids: Translated: 88; Mature: 88

Protein sequence:

>88_residues
MISPRELLAWNVKKLRVAKGMSQERLSLEAHLERVAISQIERRRINPGLDSLGKIAQALGVPITDLFKEPMKGELEPANL
RPGRRNST

Sequences:

>Translated_88_residues
MISPRELLAWNVKKLRVAKGMSQERLSLEAHLERVAISQIERRRINPGLDSLGKIAQALGVPITDLFKEPMKGELEPANL
RPGRRNST
>Mature_88_residues
MISPRELLAWNVKKLRVAKGMSQERLSLEAHLERVAISQIERRRINPGLDSLGKIAQALGVPITDLFKEPMKGELEPANL
RPGRRNST

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 9898; Mature: 9898

Theoretical pI: Translated: 11.26; Mature: 11.26

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MISPRELLAWNVKKLRVAKGMSQERLSLEAHLERVAISQIERRRINPGLDSLGKIAQALG
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
VPITDLFKEPMKGELEPANLRPGRRNST
CCHHHHHHCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MISPRELLAWNVKKLRVAKGMSQERLSLEAHLERVAISQIERRRINPGLDSLGKIAQALG
CCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHC
VPITDLFKEPMKGELEPANLRPGRRNST
CCHHHHHHCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA