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The map label for this gene is 222109145

Identifier: 222109145

GI number: 222109145

Start: 35784

End: 36209

Strand: Reverse

Name: 222109145

Synonym: Avi_9533

Alternate gene names: NA

Gene position: 36209-35784 (Counterclockwise)

Preceding gene: 222109146

Following gene: 222109144

Centisome position: 27.76

GC content: 58.22

Gene sequence:

>426_bases
ATGAAAGATGAGCCGCATGCAGTCGATGTCGCCGTCGGTCGCGCCATCCGGAAGAGGCGCATGATCAACGGGGTTTCTCA
GTCTGACCTGGGCGCGCGTATTGGCGTCACCTTCCAACAGGTCCAGAAATATGAAAAGGGCACGAACCGGGTCTCGGCAA
GCATGCTCATGGAAATTGCTTGTGCCCTGCACGTGGACGTACGAAGCTTTTTCGACGGCATCGACGCTCCGAGCGGCAAG
GAGCCACTCCATCACACTGCCACGCCAGCGGCGTTTTCTATCACCCGCGAGACCGTCGCGCTCAACCAAGCTTTCGCTCA
AATTAATGACGCCCTGCTTCGGCGAAAGATCGTTGACCTCGTGCGGGCTGTCGCCAGTTCGAGCTCTACAAGCGAGGACG
AGCTTCTGCATGACCTAGCCGAGTAG

Upstream 100 bases:

>100_bases
AGAGCCCATGAAAGGCGAACTGGAGCCGGCCAACTTGCGGCCAGGGCGACGGAATTCGACCTGATTCGCCAGTTGAACTC
AGTTCTCGTGAGGACAGCAT

Downstream 100 bases:

>100_bases
TCTGCGGCAAGTGCTCATTGCGCGTTCCTGCGCCCGTCGCCTATGGCCCCGCATTCATAACTTTCACTTACTTTGCCGGC
GTTATTAATGAGTGGTTAAT

Product: transcriptional regulator Cro/CI family

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 141; Mature: 141

Protein sequence:

>141_residues
MKDEPHAVDVAVGRAIRKRRMINGVSQSDLGARIGVTFQQVQKYEKGTNRVSASMLMEIACALHVDVRSFFDGIDAPSGK
EPLHHTATPAAFSITRETVALNQAFAQINDALLRRKIVDLVRAVASSSSTSEDELLHDLAE

Sequences:

>Translated_141_residues
MKDEPHAVDVAVGRAIRKRRMINGVSQSDLGARIGVTFQQVQKYEKGTNRVSASMLMEIACALHVDVRSFFDGIDAPSGK
EPLHHTATPAAFSITRETVALNQAFAQINDALLRRKIVDLVRAVASSSSTSEDELLHDLAE
>Mature_141_residues
MKDEPHAVDVAVGRAIRKRRMINGVSQSDLGARIGVTFQQVQKYEKGTNRVSASMLMEIACALHVDVRSFFDGIDAPSGK
EPLHHTATPAAFSITRETVALNQAFAQINDALLRRKIVDLVRAVASSSSTSEDELLHDLAE

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH cro/C1-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001387
- InterPro:   IPR010982 [H]

Pfam domain/function: PF01381 HTH_3 [H]

EC number: NA

Molecular weight: Translated: 15386; Mature: 15386

Theoretical pI: Translated: 7.07; Mature: 7.07

Prosite motif: PS50943 HTH_CROC1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKDEPHAVDVAVGRAIRKRRMINGVSQSDLGARIGVTFQQVQKYEKGTNRVSASMLMEIA
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
CALHVDVRSFFDGIDAPSGKEPLHHTATPAAFSITRETVALNQAFAQINDALLRRKIVDL
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRAVASSSSTSEDELLHDLAE
HHHHHCCCCCCHHHHHHHHHC
>Mature Secondary Structure
MKDEPHAVDVAVGRAIRKRRMINGVSQSDLGARIGVTFQQVQKYEKGTNRVSASMLMEIA
CCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
CALHVDVRSFFDGIDAPSGKEPLHHTATPAAFSITRETVALNQAFAQINDALLRRKIVDL
HHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VRAVASSSSTSEDELLHDLAE
HHHHHCCCCCCHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8868435 [H]