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The map label for this gene is yvkB [H]

Identifier: 220932190

GI number: 220932190

Start: 1450363

End: 1450923

Strand: Direct

Name: yvkB [H]

Synonym: Hore_13530

Alternate gene names: 220932190

Gene position: 1450363-1450923 (Clockwise)

Preceding gene: 220932167

Following gene: 220932191

Centisome position: 56.26

GC content: 26.38

Gene sequence:

>561_bases
ATGTCAAAAGAAAAAACTTCAAAAGCTATACTAACTGCGGCCCTTAAACTTTTTTCAAAAAAGGGTTACAGTAATGTAAC
CACAAAAGAAATATCTGAAAAAGCCGGGGTAAATGAGGTAACTATATTTAGACATTTTAAATCTAAAGAAAAACTCTTTG
AAGAAGTATTTGAACAATTTATATTTAAACCAAATATTCCTGATGTTAATGCCCTGAATAATAAAAACCCTAAAGAATTT
TTATTATGTATGGCTCATTCGTTATACGAGATATTTAAATATAATTTATCCTTAATAAAAATTGAATTGAAAAATGAGGA
AACCTCTATTGATAAAATGAGATTACCTTTAGATAAATTTGCAAATGAAATAAAAGATATTATAATAGATTATTTAAAAA
AGAACAAAGAAATAAATATTTCTCAACCAGATATTTTCACAATTAACTTCCTTTCTGCTGTCTGGGGGCTATTCATGAAT
AATCATATCATCAGACCCTTTAAACCAGCAATTGATTTTAACACCTGTATAGAAAAACTGATTACTGATCTTCTTGAATA
A

Upstream 100 bases:

>100_bases
CAAACCAATAATGTTCCTTCAATTTAGTAAAAAAAAATACTTTTGACAGAAACAAAATATTATAATATAATGTAAGCAAG
TACTTGCATGAGGTGGTAAT

Downstream 100 bases:

>100_bases
AATCTTTTATCTTTAATGCAAGTAAGTAATTACATTCACTAAAGGGGGAACCTTATATGGGTAAAAAATTTTCACAAATT
CAAACCAAAATGGAAAGGAA

Product: TetR family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 185

Protein sequence:

>186_residues
MSKEKTSKAILTAALKLFSKKGYSNVTTKEISEKAGVNEVTIFRHFKSKEKLFEEVFEQFIFKPNIPDVNALNNKNPKEF
LLCMAHSLYEIFKYNLSLIKIELKNEETSIDKMRLPLDKFANEIKDIIIDYLKKNKEINISQPDIFTINFLSAVWGLFMN
NHIIRPFKPAIDFNTCIEKLITDLLE

Sequences:

>Translated_186_residues
MSKEKTSKAILTAALKLFSKKGYSNVTTKEISEKAGVNEVTIFRHFKSKEKLFEEVFEQFIFKPNIPDVNALNNKNPKEF
LLCMAHSLYEIFKYNLSLIKIELKNEETSIDKMRLPLDKFANEIKDIIIDYLKKNKEINISQPDIFTINFLSAVWGLFMN
NHIIRPFKPAIDFNTCIEKLITDLLE
>Mature_185_residues
SKEKTSKAILTAALKLFSKKGYSNVTTKEISEKAGVNEVTIFRHFKSKEKLFEEVFEQFIFKPNIPDVNALNNKNPKEFL
LCMAHSLYEIFKYNLSLIKIELKNEETSIDKMRLPLDKFANEIKDIIIDYLKKNKEINISQPDIFTINFLSAVWGLFMNN
HIIRPFKPAIDFNTCIEKLITDLLE

Specific function: Potential Regulator Protein For The Acrab Genes. [C]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH tetR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR009057
- InterPro:   IPR015893
- InterPro:   IPR011075
- InterPro:   IPR001647 [H]

Pfam domain/function: PF00440 TetR_N [H]

EC number: NA

Molecular weight: Translated: 21671; Mature: 21539

Theoretical pI: Translated: 9.03; Mature: 9.03

Prosite motif: PS50977 HTH_TETR_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSKEKTSKAILTAALKLFSKKGYSNVTTKEISEKAGVNEVTIFRHFKSKEKLFEEVFEQF
CCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
IFKPNIPDVNALNNKNPKEFLLCMAHSLYEIFKYNLSLIKIELKNEETSIDKMRLPLDKF
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCHHHH
ANEIKDIIIDYLKKNKEINISQPDIFTINFLSAVWGLFMNNHIIRPFKPAIDFNTCIEKL
HHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
ITDLLE
HHHHCC
>Mature Secondary Structure 
SKEKTSKAILTAALKLFSKKGYSNVTTKEISEKAGVNEVTIFRHFKSKEKLFEEVFEQF
CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
IFKPNIPDVNALNNKNPKEFLLCMAHSLYEIFKYNLSLIKIELKNEETSIDKMRLPLDKF
CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHHCCHHHH
ANEIKDIIIDYLKKNKEINISQPDIFTINFLSAVWGLFMNNHIIRPFKPAIDFNTCIEKL
HHHHHHHHHHHHHCCCCCCCCCCCEEHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
ITDLLE
HHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]