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The map label for this gene is ligC

Identifier: 220915982

GI number: 220915982

Start: 975924

End: 976949

Strand: Reverse

Name: ligC

Synonym: A2cp1_0868

Alternate gene names: NA

Gene position: 976949-975924 (Counterclockwise)

Preceding gene: 220915985

Following gene: 220915980

Centisome position: 19.43

GC content: 77.39

Gene sequence:

>1026_bases
GTGGCCTGGCCACCCCTCGATCTCCCCGTGCTGCCGCCGTTTCCGCCCATGGAAGCGCGCCTCGCGGACGTGCTCCCGGC
GGACGACGGCTGGCAGTTCGAGCCGAAGTGGGATGGCTTTCGCTGCCTTCTATTCAAGCAGGATGCCGAGGTGGTGCTGC
AGTCCAAGGCAGGCCAGCCGCTCGGTCGCTACTTCCCCGAGCTGGTCGCCGCCGGGCGCTCGCTCCGCGCGCCGCGGCTC
GTGCTCGACGGCGAGATCGTGGTGCCCTCCGGGCTGGCCCTCTCCTTCGACGCGCTCCTGCAGCGGATCCACCCGGCCGA
GTCCCGCGTGCAGCGCCTCGCCCGGGAGACCCCGGCGCGGCTCGTGGCCTTCGACCTCCTGGTGGACGGCGACGGCCGGC
GGCTGGTGGAGTCACGGCTGGAGGTGCGCCGCGCCGCGCTGCTGCGCGAGGCGCCCGGGTTCCCGCCGGAGCTCTCCGTG
TCGCCGGCGACGCTGCGGCGCGCGGACGCGGAGGCCTGGCTGGCGACGCCGTCCGGCACCGACGGCGTGATCGCGAAGCG
CCTCGGCGTGCCGTACGCGTCCGGCGAGCGGGACGCGATGGTGAAGGTGAAGCGGGTGGTGACGCTGGACGCGGTGGTGG
GCGGGTTCCGGCGCGGGCAGCGCGGCGGGCCACCGGCCTCGCTGCTGCTCGGCCTGCACGGCCCCGACGGCCGCCTCCAC
CACGTGGGGCACGTCACGCTCGCGCCGCGGCAGCGCGAGCGGTTCGCCGCGCTGCTCGAGCCGCTGGCGGCGCCGGGCGC
GCCGGGGTTCACCGGCGAGGCGCCGGGCGGCCCGTCGCGCTGGGCGCGCGGGCGCTCCACCGAATGGATCCCGGTCCGGC
CGGAGCTGGTGGTGGAGGTGGCCTACCGGCACGCGGCCGGCGGCCGCCTGCGCCACGGCGCGCGCCTGCTGCGCGTCCGC
CCGGACAAGGCGCCCGCGCAGTGCGTGATGCGCGACCTGCCCGGCGGCGAGGCCCGCTTCGGCTGA

Upstream 100 bases:

>100_bases
GCGTGCACGCGGTCGCCCGGTAATCGTGCAGCGTGCCGCCGCGGCGGGCAGCGGATTGCGCGTGGAGGCTGTGGGCTGCA
ACGTCGATGGGAGCGCTCCC

Downstream 100 bases:

>100_bases
TCGCGGGGCGGCCGCCGGGGGCCGCCCGCGGGGTCATCTCCGGCCGCGCCGCGCCTGCACCGCCGCCGCCGGCTGCTCGA
CCAGGATGCCGCGCTCGCTC

Product: ATP-dependent DNA ligase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 341; Mature: 340

Protein sequence:

>341_residues
MAWPPLDLPVLPPFPPMEARLADVLPADDGWQFEPKWDGFRCLLFKQDAEVVLQSKAGQPLGRYFPELVAAGRSLRAPRL
VLDGEIVVPSGLALSFDALLQRIHPAESRVQRLARETPARLVAFDLLVDGDGRRLVESRLEVRRAALLREAPGFPPELSV
SPATLRRADAEAWLATPSGTDGVIAKRLGVPYASGERDAMVKVKRVVTLDAVVGGFRRGQRGGPPASLLLGLHGPDGRLH
HVGHVTLAPRQRERFAALLEPLAAPGAPGFTGEAPGGPSRWARGRSTEWIPVRPELVVEVAYRHAAGGRLRHGARLLRVR
PDKAPAQCVMRDLPGGEARFG

Sequences:

>Translated_341_residues
MAWPPLDLPVLPPFPPMEARLADVLPADDGWQFEPKWDGFRCLLFKQDAEVVLQSKAGQPLGRYFPELVAAGRSLRAPRL
VLDGEIVVPSGLALSFDALLQRIHPAESRVQRLARETPARLVAFDLLVDGDGRRLVESRLEVRRAALLREAPGFPPELSV
SPATLRRADAEAWLATPSGTDGVIAKRLGVPYASGERDAMVKVKRVVTLDAVVGGFRRGQRGGPPASLLLGLHGPDGRLH
HVGHVTLAPRQRERFAALLEPLAAPGAPGFTGEAPGGPSRWARGRSTEWIPVRPELVVEVAYRHAAGGRLRHGARLLRVR
PDKAPAQCVMRDLPGGEARFG
>Mature_340_residues
AWPPLDLPVLPPFPPMEARLADVLPADDGWQFEPKWDGFRCLLFKQDAEVVLQSKAGQPLGRYFPELVAAGRSLRAPRLV
LDGEIVVPSGLALSFDALLQRIHPAESRVQRLARETPARLVAFDLLVDGDGRRLVESRLEVRRAALLREAPGFPPELSVS
PATLRRADAEAWLATPSGTDGVIAKRLGVPYASGERDAMVKVKRVVTLDAVVGGFRRGQRGGPPASLLLGLHGPDGRLHH
VGHVTLAPRQRERFAALLEPLAAPGAPGFTGEAPGGPSRWARGRSTEWIPVRPELVVEVAYRHAAGGRLRHGARLLRVRP
DKAPAQCVMRDLPGGEARFG

Specific function: Unknown

COG id: COG1793

COG function: function code L; ATP-dependent DNA ligase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent DNA ligase family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012309
- InterPro:   IPR012310
- InterPro:   IPR014146
- InterPro:   IPR002755
- InterPro:   IPR014144
- InterPro:   IPR014145
- InterPro:   IPR012340
- InterPro:   IPR016027 [H]

Pfam domain/function: PF04679 DNA_ligase_A_C; PF01068 DNA_ligase_A_M; PF01896 DNA_primase_S [H]

EC number: NA

Molecular weight: Translated: 36989; Mature: 36858

Theoretical pI: Translated: 10.83; Mature: 10.83

Prosite motif: PS00697 DNA_LIGASE_A1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAWPPLDLPVLPPFPPMEARLADVLPADDGWQFEPKWDGFRCLLFKQDAEVVLQSKAGQP
CCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEECCCCCCEEEEEEECCHHHHHHHCCCCC
LGRYFPELVAAGRSLRAPRLVLDGEIVVPSGLALSFDALLQRIHPAESRVQRLARETPAR
HHHHHHHHHHCCCCCCCCEEEECCCEEECCCCEECHHHHHHHHCCHHHHHHHHHHHCCHH
LVAFDLLVDGDGRRLVESRLEVRRAALLREAPGFPPELSVSPATLRRADAEAWLATPSGT
EEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCEEECCCCC
DGVIAKRLGVPYASGERDAMVKVKRVVTLDAVVGGFRRGQRGGPPASLLLGLHGPDGRLH
CCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEE
HVGHVTLAPRQRERFAALLEPLAAPGAPGFTGEAPGGPSRWARGRSTEWIPVRPELVVEV
EEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCEEECCHHHHHHH
AYRHAAGGRLRHGARLLRVRPDKAPAQCVMRDLPGGEARFG
HHHHCCCCCHHCCCEEEEECCCCCHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
AWPPLDLPVLPPFPPMEARLADVLPADDGWQFEPKWDGFRCLLFKQDAEVVLQSKAGQP
CCCCCCCCCCCCCCCHHHHHHHHCCCCCCCEECCCCCCEEEEEEECCHHHHHHHCCCCC
LGRYFPELVAAGRSLRAPRLVLDGEIVVPSGLALSFDALLQRIHPAESRVQRLARETPAR
HHHHHHHHHHCCCCCCCCEEEECCCEEECCCCEECHHHHHHHHCCHHHHHHHHHHHCCHH
LVAFDLLVDGDGRRLVESRLEVRRAALLREAPGFPPELSVSPATLRRADAEAWLATPSGT
EEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHCCCCCEEECCCCC
DGVIAKRLGVPYASGERDAMVKVKRVVTLDAVVGGFRRGQRGGPPASLLLGLHGPDGRLH
CCHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCCEE
HVGHVTLAPRQRERFAALLEPLAAPGAPGFTGEAPGGPSRWARGRSTEWIPVRPELVVEV
EEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHCCCCCCCEEECCHHHHHHH
AYRHAAGGRLRHGARLLRVRPDKAPAQCVMRDLPGGEARFG
HHHHCCCCCHHCCCEEEEECCCCCHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9634230; 12218036 [H]