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The map label for this gene is (hspc4-1 [H]

Identifier: 220905542

GI number: 220905542

Start: 2746158

End: 2746679

Strand: Reverse

Name: (hspc4-1 [H]

Synonym: Ddes_2281

Alternate gene names: 220905542

Gene position: 2746679-2746158 (Counterclockwise)

Preceding gene: 220905544

Following gene: 220905541

Centisome position: 95.59

GC content: 54.98

Gene sequence:

>522_bases
ATGCGTAACGCTCTCAGACTTGTCCCCAATCGTTGGTTTGTGCCGCGCGAAGCCCTGCGCCGCCGCGAAGGCGCGGGCCA
GTCAGTGGATGACATTGACAGATTTTTTCAGGGGCTGTTTCAGGGAATGCTGACGCCATGGGGGATCATGCGCGGAGAAT
GGGCCTCGAATCCTAAAGAAGGCGACGCGCTCACGCCCTGCATGGACCTGACCAGCAGTGAAAAAGGCTATGCCCTGAGC
ATGGAATTACCGGGAGTGGCTCCAGAAAATGTCGACGTTTCGGTGCAGGATCGCGAGCTTGTCGTCAGTGGCGAAAAACA
GCGCGAGACAACCGAGGAAAATGAAAACAGCCATGTGACGGAACGCGTTTTCGGTTCTTTCAAAAGAACGCTGATTCTGC
CGGAAGATGCCGATGTGAACAGCATAACCGCCAACCATAAGGATGGCGTGCTGACGGTCTGCATTCCGCGTAAACCGGAA
GCATTGCCGGAAACGAAAAAGATAGAGATCACCAAGGGCTGA

Upstream 100 bases:

>100_bases
CGGAAATGCCCTTTCACAAAAACTTTTGCACAGGGTATTGACGATAATATATGCCATACTTAACTAATAGATATAACGTT
TTCCACAGGAGGTTTTGCAT

Downstream 100 bases:

>100_bases
TTACCCATGAGGCAATAAATTGCGGGGCCTTGTGCCCCGGGAGCAAAGCCGCGTTGTGGGCGGTGTCCATCCTCCTCCAG
CGGGTCAAGCGCTCCGGCCC

Product: heat shock protein Hsp20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 173; Mature: 173

Protein sequence:

>173_residues
MRNALRLVPNRWFVPREALRRREGAGQSVDDIDRFFQGLFQGMLTPWGIMRGEWASNPKEGDALTPCMDLTSSEKGYALS
MELPGVAPENVDVSVQDRELVVSGEKQRETTEENENSHVTERVFGSFKRTLILPEDADVNSITANHKDGVLTVCIPRKPE
ALPETKKIEITKG

Sequences:

>Translated_173_residues
MRNALRLVPNRWFVPREALRRREGAGQSVDDIDRFFQGLFQGMLTPWGIMRGEWASNPKEGDALTPCMDLTSSEKGYALS
MELPGVAPENVDVSVQDRELVVSGEKQRETTEENENSHVTERVFGSFKRTLILPEDADVNSITANHKDGVLTVCIPRKPE
ALPETKKIEITKG
>Mature_173_residues
MRNALRLVPNRWFVPREALRRREGAGQSVDDIDRFFQGLFQGMLTPWGIMRGEWASNPKEGDALTPCMDLTSSEKGYALS
MELPGVAPENVDVSVQDRELVVSGEKQRETTEENENSHVTERVFGSFKRTLILPEDADVNSITANHKDGVLTVCIPRKPE
ALPETKKIEITKG

Specific function: Unknown

COG id: COG0071

COG function: function code O; Molecular chaperone (small heat shock protein)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the small heat shock protein (HSP20) family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002068
- InterPro:   IPR008978 [H]

Pfam domain/function: PF00011 HSP20 [H]

EC number: NA

Molecular weight: Translated: 19396; Mature: 19396

Theoretical pI: Translated: 4.95; Mature: 4.95

Prosite motif: PS01031 HSP20

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRNALRLVPNRWFVPREALRRREGAGQSVDDIDRFFQGLFQGMLTPWGIMRGEWASNPKE
CCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
GDALTPCMDLTSSEKGYALSMELPGVAPENVDVSVQDRELVVSGEKQRETTEENENSHVT
CCCCCHHHHCCCCCCCEEEEEECCCCCCCCCEEEEECCEEEEECCHHHHHCCCCCCCHHH
ERVFGSFKRTLILPEDADVNSITANHKDGVLTVCIPRKPEALPETKKIEITKG
HHHHHHHHHEEECCCCCCCCCEECCCCCCEEEEEECCCCCCCCCCCEEEEECC
>Mature Secondary Structure
MRNALRLVPNRWFVPREALRRREGAGQSVDDIDRFFQGLFQGMLTPWGIMRGEWASNPKE
CCCCCCCCCCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
GDALTPCMDLTSSEKGYALSMELPGVAPENVDVSVQDRELVVSGEKQRETTEENENSHVT
CCCCCHHHHCCCCCCCEEEEEECCCCCCCCCEEEEECCEEEEECCHHHHHCCCCCCCHHH
ERVFGSFKRTLILPEDADVNSITANHKDGVLTVCIPRKPEALPETKKIEITKG
HHHHHHHHHEEECCCCCCCCCEECCCCCCEEEEEECCCCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA