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The map label for this gene is yebA [H]

Identifier: 220905421

GI number: 220905421

Start: 2602917

End: 2603816

Strand: Reverse

Name: yebA [H]

Synonym: Ddes_2159

Alternate gene names: 220905421

Gene position: 2603816-2602917 (Counterclockwise)

Preceding gene: 220905422

Following gene: 220905420

Centisome position: 90.62

GC content: 60.22

Gene sequence:

>900_bases
ATGCTTTTCGGCAAATACCATATAGTCATATTCAAAGAGGGCCGTAGCGGCAGCCGTAATCTGCGGATGCGCGGCTGGTT
CGGCTTTTCGGTCTGCGCGCTGGTGCTGGCCCTGGTGGCCTGCAATGTCTGGCTGCTTCAGGCGTGGCTTGAGTCACGCC
ATCTTGACGATGACCTTGAGAGCGCCCAGCGGGTGATCACCGAGCAGCGCCGCCAGCTTGTGAGCCTGGCCGAGCGCATA
TCCCAGGTGAGCCGCGACCTGCAGCGGGTGCAGGGGTTTGACTCCAAGCTTCGTATCATGATGAATATGGAAAAAGATCC
CGCTGATGCAGGCGGAGGGCTTGATCTTGTGGGCGATTTTTCACGTTCCTACCTGCCGCTGCACCGGCAGGAGCTGGCAG
CCCGCAAGATGCAGGATTTTCTCGAGCGCCTTTCGGAGTCTGCCCGGCTTGAAGAAGTGCGGCAGCAGGATCTTTTGCTG
GCCCTGCGCGAAAATCGTGACGCGCTTTCTTCCATGCCGACCATCTGGCCCGTTGTGGGTTTTGTGTCTTCAAGTTTCGG
GAGGCGCTCGTCGCCTTTTGGCGGGCGGGGGCAGTTCCACAAGGGGCTGGACATCACCAACCGCGTGGGTACGCCCATTG
TGGCTCCGGCCCAGGGGCTGGTCATCCAGTCCGGTCACGATGGGGCCTACGGGCTGAGTATCGAAATCAATCATGGCGGC
GGCATTATCACCAAGTACGGGCATATGCAGCGCTGTGCCGTACCCGCGGGCGTGTGGGTCAAGCGCGGGCAGGTCATCGG
TTATGTGGGCATGAGCGGAAGAACCACCGGGCCGCACCTGCATTACGAGGTGCGCCTTAATGGGGTTCCCGTCAATCCCA
TGCGCTATATTCTGGACTGA

Upstream 100 bases:

>100_bases
CGCGCAGGCAGACATGCGGGAAGGTGTGCAGGATGACGGCTGAGGGTGTGCGCGCCAATCGCATTGACAGGGCCGCCACA
GCCCCCTAAAGTTGCTCCGC

Downstream 100 bases:

>100_bases
TCGCCCCCGTGCCGGCTTTTTGCGGGGCAAGCCCGCGGGTCTGCCCGGCAGGGCGCTTTGCCCGCACTGCTCGTAGGCAG
GTAACGCAGGTTTGTGTCGC

Product: peptidase M23

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 299; Mature: 299

Protein sequence:

>299_residues
MLFGKYHIVIFKEGRSGSRNLRMRGWFGFSVCALVLALVACNVWLLQAWLESRHLDDDLESAQRVITEQRRQLVSLAERI
SQVSRDLQRVQGFDSKLRIMMNMEKDPADAGGGLDLVGDFSRSYLPLHRQELAARKMQDFLERLSESARLEEVRQQDLLL
ALRENRDALSSMPTIWPVVGFVSSSFGRRSSPFGGRGQFHKGLDITNRVGTPIVAPAQGLVIQSGHDGAYGLSIEINHGG
GIITKYGHMQRCAVPAGVWVKRGQVIGYVGMSGRTTGPHLHYEVRLNGVPVNPMRYILD

Sequences:

>Translated_299_residues
MLFGKYHIVIFKEGRSGSRNLRMRGWFGFSVCALVLALVACNVWLLQAWLESRHLDDDLESAQRVITEQRRQLVSLAERI
SQVSRDLQRVQGFDSKLRIMMNMEKDPADAGGGLDLVGDFSRSYLPLHRQELAARKMQDFLERLSESARLEEVRQQDLLL
ALRENRDALSSMPTIWPVVGFVSSSFGRRSSPFGGRGQFHKGLDITNRVGTPIVAPAQGLVIQSGHDGAYGLSIEINHGG
GIITKYGHMQRCAVPAGVWVKRGQVIGYVGMSGRTTGPHLHYEVRLNGVPVNPMRYILD
>Mature_299_residues
MLFGKYHIVIFKEGRSGSRNLRMRGWFGFSVCALVLALVACNVWLLQAWLESRHLDDDLESAQRVITEQRRQLVSLAERI
SQVSRDLQRVQGFDSKLRIMMNMEKDPADAGGGLDLVGDFSRSYLPLHRQELAARKMQDFLERLSESARLEEVRQQDLLL
ALRENRDALSSMPTIWPVVGFVSSSFGRRSSPFGGRGQFHKGLDITNRVGTPIVAPAQGLVIQSGHDGAYGLSIEINHGG
GIITKYGHMQRCAVPAGVWVKRGQVIGYVGMSGRTTGPHLHYEVRLNGVPVNPMRYILD

Specific function: Could be involved in cell wall degradation or formation [H]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI87081989, Length=114, Percent_Identity=42.1052631578947, Blast_Score=94, Evalue=8e-21,
Organism=Escherichia coli, GI87082297, Length=125, Percent_Identity=34.4, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1789099, Length=123, Percent_Identity=36.5853658536585, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011055
- InterPro:   IPR013731
- InterPro:   IPR016047
- InterPro:   IPR002886
- InterPro:   IPR018392
- InterPro:   IPR002482 [H]

Pfam domain/function: PF01476 LysM; PF08525 OapA_N; PF01551 Peptidase_M23 [H]

EC number: 3.4.24.- [C]

Molecular weight: Translated: 33412; Mature: 33412

Theoretical pI: Translated: 9.98; Mature: 9.98

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFGKYHIVIFKEGRSGSRNLRMRGWFGFSVCALVLALVACNVWLLQAWLESRHLDDDLE
CCEEEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
SAQRVITEQRRQLVSLAERISQVSRDLQRVQGFDSKLRIMMNMEKDPADAGGGLDLVGDF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHCC
SRSYLPLHRQELAARKMQDFLERLSESARLEEVRQQDLLLALRENRDALSSMPTIWPVVG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHH
FVSSSFGRRSSPFGGRGQFHKGLDITNRVGTPIVAPAQGLVIQSGHDGAYGLSIEINHGG
HHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCEECCCCCEEEECCCCCEEEEEEEEECCC
GIITKYGHMQRCAVPAGVWVKRGQVIGYVGMSGRTTGPHLHYEVRLNGVPVNPMRYILD
CEEECCCCHHHHCCCCCCEEECCCEEEEEECCCCCCCCEEEEEEEECCCCCCHHHHHCC
>Mature Secondary Structure
MLFGKYHIVIFKEGRSGSRNLRMRGWFGFSVCALVLALVACNVWLLQAWLESRHLDDDLE
CCEEEEEEEEEECCCCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH
SAQRVITEQRRQLVSLAERISQVSRDLQRVQGFDSKLRIMMNMEKDPADAGGGLDLVGDF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCCHHCC
SRSYLPLHRQELAARKMQDFLERLSESARLEEVRQQDLLLALRENRDALSSMPTIWPVVG
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCHHHHHHH
FVSSSFGRRSSPFGGRGQFHKGLDITNRVGTPIVAPAQGLVIQSGHDGAYGLSIEINHGG
HHHHHCCCCCCCCCCCCCCCCCCCCHHHCCCCEECCCCCEEEECCCCCEEEEEEEEECCC
GIITKYGHMQRCAVPAGVWVKRGQVIGYVGMSGRTTGPHLHYEVRLNGVPVNPMRYILD
CEEECCCCHHHHCCCCCCEEECCCEEEEEECCCCCCCCEEEEEEEECCCCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]