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The map label for this gene is jag [H]

Identifier: 220905228

GI number: 220905228

Start: 2370808

End: 2372175

Strand: Reverse

Name: jag [H]

Synonym: Ddes_1966

Alternate gene names: 220905228

Gene position: 2372175-2370808 (Counterclockwise)

Preceding gene: 220905229

Following gene: 220905227

Centisome position: 82.56

GC content: 62.21

Gene sequence:

>1368_bases
ATGGAAGGGTTCAAGGAATTCCAGGGCAAAGACCTGGACAGCGCCATAGAGGAAGCCTGCGGCTACTTCAACACGGCGCG
TGAAAAACTGGAAATCGAGATCGTGCAGGATTCAAAATCCGGCATCTTCGGCATCGTCGGGGCGCGTAAGGCCAAAGTTC
GCGCCCGCCGGGTGCAGCTGCGCGAGGCTGTTGAAAACATATTGGGACGCAAAGGGGGGCAGGCCGCCCCCCCCGCCGAT
GTTCCCGCTGAAACCGCAAACCAGTCTGTTGCAGACGCGGACGGCAAGGCCCGGGCTTCGCGGCAGCGTGAAGAATCTCC
GTCTTCTGCCCCTCGGCAGGAAAAACGTCATGACCGCGCCCGCGGCCGCAAGGCCGGTCAGGAAGAAGCAGCGGCAGGAA
CTGAAGGTGCCGCGGACGTCGCTGCTGGGCGGAGTGAAAGCCCCCGTGATGCAGAACGTTCTGCCGGAAGCGCCAGCCAG
AAACCCGAAAAAAAGCATGAAAAAAATACCGGACGCAGCAGCGAGAAGAGTACCCCGCGTAATGACGACAAGGGGGCGCG
CAAAAACGGCACTGTAAAGCCCGCTGACGAGAGCTGCGCGTGCAGCAGCGAAAAAACCGCGGAAAAGACCGCCGGCGCAG
GAAAGAACGGCGAAAAGTCCGACAGGGCGTCCGGGCGTGGTCAGAACGGGCATGCCGAAAACGGCAAGCGCGGCGAAGGC
CGCGGCCGCAGGAGCGACCCCCGCGAGGGGCGCGACGCCCGCGACAACCGCAACGCCGCGAAGGAAGGCGGACGCGATGC
TGTACGGCAAGCCCGCCCCGGAACTGCGGATATGCTGGATGACGATTTTGAAGAAGCGGCTGAAGGGCTGCCCGTCACTC
CTCTGGAGCAGCTTGATCAGGAGCAGCTTATGGCCCTTGTGCACGAAACCGTGCGCAGCCTGGTGCGCCCCATCGTGGGC
GAAGCCGTACAGCTTGAAGTAGCAGTGGCTGGCGGCAGGGTGCAGGTGGGCATTGAAAGTGAAGAGGATTCCGGTTTGCT
CATCGGCCGCGAAGGCCAGACTCTGGCCGCGCTCCAGTACATGATTTCTCGTATTGTGTCGCGAGGTATGAACGCCGCTG
TGCGTGTACAGCTTGATGCCGGTGAATATCGTCGGCGTCAGGATGAGCGGCTGCGTGAGATGGCTCTTGCCCTGGCCGAC
AAGGTACGCCAGAGCGGCCGCTCCTATTCCACGCGTCCCCTGTCTTCCTATCACCGCCGCATTGTGCATGTCTGCCTCCA
GGACGCGACCGACGTGCAGACGCGCAGCACGGGCGACGGCCCCCTGAAGCGGGTAGTGATACTGCGCAGAAAGACCGAAA
AAAATTAA

Upstream 100 bases:

>100_bases
CATAGCCCAGCAGCAGATGATGATCCGGAAGTTCAAGGCCAACGCCGCCGCGAAATAGCCGCAGCGACGGCTTGCGATAC
CTATTGGAACGAGGATGATT

Downstream 100 bases:

>100_bases
CGTATTGCCCCGGCAACACGCTACAGTACGGCGCGGATCAGTAAAAAGTCCGCGCCGTAGCGCTTTTGATGCGGGTGCTG
CCTGTGCAGACCGCAATGAG

Product: single-stranded nucleic acid binding R3H domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 455; Mature: 455

Protein sequence:

>455_residues
MEGFKEFQGKDLDSAIEEACGYFNTAREKLEIEIVQDSKSGIFGIVGARKAKVRARRVQLREAVENILGRKGGQAAPPAD
VPAETANQSVADADGKARASRQREESPSSAPRQEKRHDRARGRKAGQEEAAAGTEGAADVAAGRSESPRDAERSAGSASQ
KPEKKHEKNTGRSSEKSTPRNDDKGARKNGTVKPADESCACSSEKTAEKTAGAGKNGEKSDRASGRGQNGHAENGKRGEG
RGRRSDPREGRDARDNRNAAKEGGRDAVRQARPGTADMLDDDFEEAAEGLPVTPLEQLDQEQLMALVHETVRSLVRPIVG
EAVQLEVAVAGGRVQVGIESEEDSGLLIGREGQTLAALQYMISRIVSRGMNAAVRVQLDAGEYRRRQDERLREMALALAD
KVRQSGRSYSTRPLSSYHRRIVHVCLQDATDVQTRSTGDGPLKRVVILRRKTEKN

Sequences:

>Translated_455_residues
MEGFKEFQGKDLDSAIEEACGYFNTAREKLEIEIVQDSKSGIFGIVGARKAKVRARRVQLREAVENILGRKGGQAAPPAD
VPAETANQSVADADGKARASRQREESPSSAPRQEKRHDRARGRKAGQEEAAAGTEGAADVAAGRSESPRDAERSAGSASQ
KPEKKHEKNTGRSSEKSTPRNDDKGARKNGTVKPADESCACSSEKTAEKTAGAGKNGEKSDRASGRGQNGHAENGKRGEG
RGRRSDPREGRDARDNRNAAKEGGRDAVRQARPGTADMLDDDFEEAAEGLPVTPLEQLDQEQLMALVHETVRSLVRPIVG
EAVQLEVAVAGGRVQVGIESEEDSGLLIGREGQTLAALQYMISRIVSRGMNAAVRVQLDAGEYRRRQDERLREMALALAD
KVRQSGRSYSTRPLSSYHRRIVHVCLQDATDVQTRSTGDGPLKRVVILRRKTEKN
>Mature_455_residues
MEGFKEFQGKDLDSAIEEACGYFNTAREKLEIEIVQDSKSGIFGIVGARKAKVRARRVQLREAVENILGRKGGQAAPPAD
VPAETANQSVADADGKARASRQREESPSSAPRQEKRHDRARGRKAGQEEAAAGTEGAADVAAGRSESPRDAERSAGSASQ
KPEKKHEKNTGRSSEKSTPRNDDKGARKNGTVKPADESCACSSEKTAEKTAGAGKNGEKSDRASGRGQNGHAENGKRGEG
RGRRSDPREGRDARDNRNAAKEGGRDAVRQARPGTADMLDDDFEEAAEGLPVTPLEQLDQEQLMALVHETVRSLVRPIVG
EAVQLEVAVAGGRVQVGIESEEDSGLLIGREGQTLAALQYMISRIVSRGMNAAVRVQLDAGEYRRRQDERLREMALALAD
KVRQSGRSYSTRPLSSYHRRIVHVCLQDATDVQTRSTGDGPLKRVVILRRKTEKN

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 49305; Mature: 49305

Theoretical pI: Translated: 9.79; Mature: 9.79

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MEGFKEFQGKDLDSAIEEACGYFNTAREKLEIEIVQDSKSGIFGIVGARKAKVRARRVQL
CCCHHHHCCCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCCEEEECCCHHHHHHHHHHHH
REAVENILGRKGGQAAPPADVPAETANQSVADADGKARASRQREESPSSAPRQEKRHDRA
HHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHH
RGRKAGQEEAAAGTEGAADVAAGRSESPRDAERSAGSASQKPEKKHEKNTGRSSEKSTPR
HHHCCCHHHHHCCCCCCHHHHCCCCCCCCHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCC
NDDKGARKNGTVKPADESCACSSEKTAEKTAGAGKNGEKSDRASGRGQNGHAENGKRGEG
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC
RGRRSDPREGRDARDNRNAAKEGGRDAVRQARPGTADMLDDDFEEAAEGLPVTPLEQLDQ
CCCCCCCCCCCCCHHCCHHHHHCCHHHHHHCCCCCHHHHHCHHHHHHCCCCCCCHHHCCH
EQLMALVHETVRSLVRPIVGEAVQLEVAVAGGRVQVGIESEEDSGLLIGREGQTLAALQY
HHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEEEEEECCCCCCEEEECCCCHHHHHHH
MISRIVSRGMNAAVRVQLDAGEYRRRQDERLREMALALADKVRQSGRSYSTRPLSSYHRR
HHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
IVHVCLQDATDVQTRSTGDGPLKRVVILRRKTEKN
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC
>Mature Secondary Structure
MEGFKEFQGKDLDSAIEEACGYFNTAREKLEIEIVQDSKSGIFGIVGARKAKVRARRVQL
CCCHHHHCCCCHHHHHHHHHHHHHHHHHHEEEEEEECCCCCEEEECCCHHHHHHHHHHHH
REAVENILGRKGGQAAPPADVPAETANQSVADADGKARASRQREESPSSAPRQEKRHDRA
HHHHHHHHCCCCCCCCCCCCCCHHHHCCCHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHH
RGRKAGQEEAAAGTEGAADVAAGRSESPRDAERSAGSASQKPEKKHEKNTGRSSEKSTPR
HHHCCCHHHHHCCCCCCHHHHCCCCCCCCHHHHCCCCCCCCCHHHHHHCCCCCCCCCCCC
NDDKGARKNGTVKPADESCACSSEKTAEKTAGAGKNGEKSDRASGRGQNGHAENGKRGEG
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCHHCCCCCCCCCCCCCCCCCC
RGRRSDPREGRDARDNRNAAKEGGRDAVRQARPGTADMLDDDFEEAAEGLPVTPLEQLDQ
CCCCCCCCCCCCCHHCCHHHHHCCHHHHHHCCCCCHHHHHCHHHHHHCCCCCCCHHHCCH
EQLMALVHETVRSLVRPIVGEAVQLEVAVAGGRVQVGIESEEDSGLLIGREGQTLAALQY
HHHHHHHHHHHHHHHHHHHCCCEEEEEEEECCEEEEEEECCCCCCEEEECCCCHHHHHHH
MISRIVSRGMNAAVRVQLDAGEYRRRQDERLREMALALADKVRQSGRSYSTRPLSSYHRR
HHHHHHHCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHH
IVHVCLQDATDVQTRSTGDGPLKRVVILRRKTEKN
HHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]