| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is yqfF [H]
Identifier: 220904824
GI number: 220904824
Start: 1870118
End: 1872673
Strand: Reverse
Name: yqfF [H]
Synonym: Ddes_1557
Alternate gene names: 220904824
Gene position: 1872673-1870118 (Counterclockwise)
Preceding gene: 220904825
Following gene: 220904823
Centisome position: 65.17
GC content: 58.76
Gene sequence:
>2556_bases ATGATAACGCAGAAAAAGACGGCCAGACCAGCTAGCTTCCTGGCGCTTGTTCAGGCGCTGAGGGCGCGGCATCATTGTGG ATGGGGGCTTGCGGCCCTCATTCTTACTCTTCTGGCTCTTTCGCTTCTGGCGGGAGCCAACTTTGAAGTTGTCCCCAGAA TTTATGTGGCCGGTCAGGTGGCGGACTCGGATGTCATTGCCGACCGGGACCTGCTGGTAGAAGATACGCAGGCCACCAAG GCCCGCCGCAAGCAGGTGCTGTTTCTGCAGCCTCCGGTGTACGATCTGAGCCTTGAGCCGTATGTAGCCTTTCAGAACCG TATTGTGGAGGTCCTGCGCAGCATCAATAACGGCGTGGACTACAGGACCCAGGCCGGCCCCCTGCAAAGGCTGGCCGATG AACTGACGCCGCCCGTGGCCGATGAGGTCCTGCCCGAACTGGCGCAGCCGCAGGTGCAGGAATATCTGCTGAAAATCCTG CTGCCCAGTATTCGAGAGCACATGGCCGAAGGGCTTGTGGGCGACATCCGTTCCGCTCGGGTGGGCCGTAGCGGCGTTAT CATACGCAATCTTGACAATAACACGGAGATGCTGCGCCCGGAGATTTCCAACCTGCCTGACGTACAGTCTTTTCTTGCAG AAATTTCTTCCGTCATCCGTCAGGTTCCTACCCTGAACCCGCAGTCCCGCAGGGCCATCAATATCCTGCTGTCCGCCACC ATGCCCGCCTCGCTCACGCTTAACCGCGAATCTACGCAAAAGCGCGGCAACGCCGTTATGGGAATGGTGGAACCCGTGTA CTACCAGATTCTCAAGGGTGAACTGCTGCTGCGCAAGGGCGAGCGCGTAAGCCGCGAACAGCAGATAAAGCTGCAGACCC TGTACAAATCAGCTTCAGATCCCATGCACTGGTGCGCGGCCGCGGGGACGTTTATTTGCGCCCTGCTGCTGGCGGTGGGC TTTTTTGTGGCTCCCAGCGGCAAGCCCGGCACACCGCTACGCTGCAAGGACATGCTGCTCATTTCACTGGTGCTGCTCCT ATTCAGCGCCGGGGCCAAAATTGTCTATGTGCTTGGCTTGCGCATGGACAGCGTAACGTTTCTCAAGACGCTGAGCCTGG GCTTTCCCGTAGCCGGGGCAGTGGGGCTGGTAGCCATGGTTTTTGCTGCCAGACGTTACTGCACCATGGGCCTTCTGCTG TCTTTCTTTACCATGCTCATGTTTCAGGAAGGGTTTTACTACTTCCTTTACCAGTTCCTGGGCGGCATGCTGGCTACATG GCTTGTGACCAATGCCCAAAGTCGGCAGGACGTGGTGTGGAGCGTCATTCCCCTGACCATAGGGCAATCGCTTATCTGGC TGGGTACGGCCCTGCTTTCACAAACCGTTCCGGCGGAACTGCCCATGCAGCTTGCGGCCGTGGCCATCAACAGCCTTTTG TCGCTTATTCTGCTTTTTGCCGTCAGCCCGGTACTGGAACTCAGTTTCGGCTACAGTACGCGCTTTCGTCTTATGGAGCT TATGAGCCTTGAGCAGCCTCTTATGCAGGAGCTTATGGTCACGGTTCCCGGCACCTATCACCATTCGCTGGTGGTTTCCA ATATGGTGGAAGCGGGCGCAAAGGCCATCGGGGCCAACAGCCTGCTGTGCAAGGTGGCGGCCCTGTATCATGACGTGGGC AAGCTGTCCTACCCCGAATACTTCATTGAAAACCAGTTTGGCGGTCCTAACAAGCACGACAAGCTCGCGCCTTCCATGAG CGCGCTTATTTTGCTGTCGCACGTCAAAAAAGGCACGGAACTGGCCGAACGCTACAAGCTCGGACAGGACATTGCGGATA TTATCAGCCAGCATCACGGCACACGGCTTATCCGCTTCTTTTACCAGAAAGCCCTCAATATGGGCGAAAAACCCAGAGAA TCTGACTACAGCTATGTGGGACCGCGCCCGCAAACCAAGGAAGCCGCCATCCTCATGCTGGCCGACTCGGTAGAAGCGTC CAGCCGTACGCTTACCGACCCCACTCCGGCCCGCATCAAAAGCCATATCGATACCATCATCAAGGGTATTTTTTCGGAAG GGCAGCTGGATGAATCCGAACTGACCTTCAAGGACCTGCATTATCTCAGCGAGAATTTCCAGCGCATCCTTACAGGCATT TTTCACCAGCGCATAGCCTATCCTGACGCCAAGATACGTGACGTAGCCAAGGCTGCGGGCAGGCCCGAAGGCCGGGCAGA GGGCAAGGGGGGGCAGCCCGCCACGTCGGCAGCGGCCCCGGCGGGCCAGACGCGGCAGCATTCCCGTGCCAGCGCGGACA GCGTTGCCTCCGGCAGTCTCTCAGGTGGGCCGGTTGCGGCAGACGCGGGCAGGGTGGCGGAAGCACCGGGCGCGTTGCCT GCGGCCGCAGGGGAGCATGCGCCGGGTTTGCGTGAAGCACCTGATGCGGCTGGTATGCCTACTGCAGAAAAACCCGCCGT GACAGATACAACGGAAGAGGACGGTCCGGTGGCCGGAATCTCCCGCAACGGGCCTTCGGGCAATGGCACGCGGTGA
Upstream 100 bases:
>100_bases GCGCTGAACATTCTTCCCCATGTGCCGGGCCTTGCCGTACACCGCTTCAGCAAAGCGGACGTTGTGCGCCATCCCCTGGT GGGAGCCATAGTAAACGCTT
Downstream 100 bases:
>100_bases AGCCGCATCCGGAAGCCGTGCGTGTTTTTCGCCGCTATCCGTCAGGATGCGCGCTTGCGCCGCTGCACTGGCGTCAGATG CGCACTGCCCTGCATGCCAT
Product: metal dependent phosphohydrolase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 851; Mature: 851
Protein sequence:
>851_residues MITQKKTARPASFLALVQALRARHHCGWGLAALILTLLALSLLAGANFEVVPRIYVAGQVADSDVIADRDLLVEDTQATK ARRKQVLFLQPPVYDLSLEPYVAFQNRIVEVLRSINNGVDYRTQAGPLQRLADELTPPVADEVLPELAQPQVQEYLLKIL LPSIREHMAEGLVGDIRSARVGRSGVIIRNLDNNTEMLRPEISNLPDVQSFLAEISSVIRQVPTLNPQSRRAINILLSAT MPASLTLNRESTQKRGNAVMGMVEPVYYQILKGELLLRKGERVSREQQIKLQTLYKSASDPMHWCAAAGTFICALLLAVG FFVAPSGKPGTPLRCKDMLLISLVLLLFSAGAKIVYVLGLRMDSVTFLKTLSLGFPVAGAVGLVAMVFAARRYCTMGLLL SFFTMLMFQEGFYYFLYQFLGGMLATWLVTNAQSRQDVVWSVIPLTIGQSLIWLGTALLSQTVPAELPMQLAAVAINSLL SLILLFAVSPVLELSFGYSTRFRLMELMSLEQPLMQELMVTVPGTYHHSLVVSNMVEAGAKAIGANSLLCKVAALYHDVG KLSYPEYFIENQFGGPNKHDKLAPSMSALILLSHVKKGTELAERYKLGQDIADIISQHHGTRLIRFFYQKALNMGEKPRE SDYSYVGPRPQTKEAAILMLADSVEASSRTLTDPTPARIKSHIDTIIKGIFSEGQLDESELTFKDLHYLSENFQRILTGI FHQRIAYPDAKIRDVAKAAGRPEGRAEGKGGQPATSAAAPAGQTRQHSRASADSVASGSLSGGPVAADAGRVAEAPGALP AAAGEHAPGLREAPDAAGMPTAEKPAVTDTTEEDGPVAGISRNGPSGNGTR
Sequences:
>Translated_851_residues MITQKKTARPASFLALVQALRARHHCGWGLAALILTLLALSLLAGANFEVVPRIYVAGQVADSDVIADRDLLVEDTQATK ARRKQVLFLQPPVYDLSLEPYVAFQNRIVEVLRSINNGVDYRTQAGPLQRLADELTPPVADEVLPELAQPQVQEYLLKIL LPSIREHMAEGLVGDIRSARVGRSGVIIRNLDNNTEMLRPEISNLPDVQSFLAEISSVIRQVPTLNPQSRRAINILLSAT MPASLTLNRESTQKRGNAVMGMVEPVYYQILKGELLLRKGERVSREQQIKLQTLYKSASDPMHWCAAAGTFICALLLAVG FFVAPSGKPGTPLRCKDMLLISLVLLLFSAGAKIVYVLGLRMDSVTFLKTLSLGFPVAGAVGLVAMVFAARRYCTMGLLL SFFTMLMFQEGFYYFLYQFLGGMLATWLVTNAQSRQDVVWSVIPLTIGQSLIWLGTALLSQTVPAELPMQLAAVAINSLL SLILLFAVSPVLELSFGYSTRFRLMELMSLEQPLMQELMVTVPGTYHHSLVVSNMVEAGAKAIGANSLLCKVAALYHDVG KLSYPEYFIENQFGGPNKHDKLAPSMSALILLSHVKKGTELAERYKLGQDIADIISQHHGTRLIRFFYQKALNMGEKPRE SDYSYVGPRPQTKEAAILMLADSVEASSRTLTDPTPARIKSHIDTIIKGIFSEGQLDESELTFKDLHYLSENFQRILTGI FHQRIAYPDAKIRDVAKAAGRPEGRAEGKGGQPATSAAAPAGQTRQHSRASADSVASGSLSGGPVAADAGRVAEAPGALP AAAGEHAPGLREAPDAAGMPTAEKPAVTDTTEEDGPVAGISRNGPSGNGTR >Mature_851_residues MITQKKTARPASFLALVQALRARHHCGWGLAALILTLLALSLLAGANFEVVPRIYVAGQVADSDVIADRDLLVEDTQATK ARRKQVLFLQPPVYDLSLEPYVAFQNRIVEVLRSINNGVDYRTQAGPLQRLADELTPPVADEVLPELAQPQVQEYLLKIL LPSIREHMAEGLVGDIRSARVGRSGVIIRNLDNNTEMLRPEISNLPDVQSFLAEISSVIRQVPTLNPQSRRAINILLSAT MPASLTLNRESTQKRGNAVMGMVEPVYYQILKGELLLRKGERVSREQQIKLQTLYKSASDPMHWCAAAGTFICALLLAVG FFVAPSGKPGTPLRCKDMLLISLVLLLFSAGAKIVYVLGLRMDSVTFLKTLSLGFPVAGAVGLVAMVFAARRYCTMGLLL SFFTMLMFQEGFYYFLYQFLGGMLATWLVTNAQSRQDVVWSVIPLTIGQSLIWLGTALLSQTVPAELPMQLAAVAINSLL SLILLFAVSPVLELSFGYSTRFRLMELMSLEQPLMQELMVTVPGTYHHSLVVSNMVEAGAKAIGANSLLCKVAALYHDVG KLSYPEYFIENQFGGPNKHDKLAPSMSALILLSHVKKGTELAERYKLGQDIADIISQHHGTRLIRFFYQKALNMGEKPRE SDYSYVGPRPQTKEAAILMLADSVEASSRTLTDPTPARIKSHIDTIIKGIFSEGQLDESELTFKDLHYLSENFQRILTGI FHQRIAYPDAKIRDVAKAAGRPEGRAEGKGGQPATSAAAPAGQTRQHSRASADSVASGSLSGGPVAADAGRVAEAPGALP AAAGEHAPGLREAPDAAGMPTAEKPAVTDTTEEDGPVAGISRNGPSGNGTR
Specific function: Unknown
COG id: COG1480
COG function: function code R; Predicted membrane-associated HD superfamily hydrolase
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR011624 - InterPro: IPR011621 - InterPro: IPR003607 - InterPro: IPR006675 [H]
Pfam domain/function: PF07698 7TM-7TMR_HD; PF07697 7TMR-HDED [H]
EC number: NA
Molecular weight: Translated: 92390; Mature: 92390
Theoretical pI: Translated: 8.49; Mature: 8.49
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.7 %Cys (Translated Protein) 2.8 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 0.7 %Cys (Mature Protein) 2.8 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MITQKKTARPASFLALVQALRARHHCGWGLAALILTLLALSLLAGANFEVVPRIYVAGQV CCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEECEEEEECCC ADSDVIADRDLLVEDTQATKARRKQVLFLQPPVYDLSLEPYVAFQNRIVEVLRSINNGVD CCCCHHCCCCHHEECHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC YRTQAGPLQRLADELTPPVADEVLPELAQPQVQEYLLKILLPSIREHMAEGLVGDIRSAR CCCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC VGRSGVIIRNLDNNTEMLRPEISNLPDVQSFLAEISSVIRQVPTLNPQSRRAINILLSAT CCCCCEEEEECCCCHHHHCCHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHEECC MPASLTLNRESTQKRGNAVMGMVEPVYYQILKGELLLRKGERVSREQQIKLQTLYKSASD CCCEEEECCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHCHHHHHHHHHHHHCCCC PMHWCAAAGTFICALLLAVGFFVAPSGKPGTPLRCKDMLLISLVLLLFSAGAKIVYVLGL HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEC RMDSVTFLKTLSLGFPVAGAVGLVAMVFAARRYCTMGLLLSFFTMLMFQEGFYYFLYQFL CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GGMLATWLVTNAQSRQDVVWSVIPLTIGQSLIWLGTALLSQTVPAELPMQLAAVAINSLL HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH SLILLFAVSPVLELSFGYSTRFRLMELMSLEQPLMQELMVTVPGTYHHSLVVSNMVEAGA HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH KAIGANSLLCKVAALYHDVGKLSYPEYFIENQFGGPNKHDKLAPSMSALILLSHVKKGTE HHHCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH LAERYKLGQDIADIISQHHGTRLIRFFYQKALNMGEKPRESDYSYVGPRPQTKEAAILML HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEE ADSVEASSRTLTDPTPARIKSHIDTIIKGIFSEGQLDESELTFKDLHYLSENFQRILTGI ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH FHQRIAYPDAKIRDVAKAAGRPEGRAEGKGGQPATSAAAPAGQTRQHSRASADSVASGSL HHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCC SGGPVAADAGRVAEAPGALPAAAGEHAPGLREAPDAAGMPTAEKPAVTDTTEEDGPVAGI CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC SRNGPSGNGTR CCCCCCCCCCC >Mature Secondary Structure MITQKKTARPASFLALVQALRARHHCGWGLAALILTLLALSLLAGANFEVVPRIYVAGQV CCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEECEEEEECCC ADSDVIADRDLLVEDTQATKARRKQVLFLQPPVYDLSLEPYVAFQNRIVEVLRSINNGVD CCCCHHCCCCHHEECHHHHHHHHCCEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCC YRTQAGPLQRLADELTPPVADEVLPELAQPQVQEYLLKILLPSIREHMAEGLVGDIRSAR CCCCCCHHHHHHHHCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC VGRSGVIIRNLDNNTEMLRPEISNLPDVQSFLAEISSVIRQVPTLNPQSRRAINILLSAT CCCCCEEEEECCCCHHHHCCHHCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHEECC MPASLTLNRESTQKRGNAVMGMVEPVYYQILKGELLLRKGERVSREQQIKLQTLYKSASD CCCEEEECCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHCHHHHHHHHHHHHCCCC PMHWCAAAGTFICALLLAVGFFVAPSGKPGTPLRCKDMLLISLVLLLFSAGAKIVYVLGL HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEEEEC RMDSVTFLKTLSLGFPVAGAVGLVAMVFAARRYCTMGLLLSFFTMLMFQEGFYYFLYQFL CCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GGMLATWLVTNAQSRQDVVWSVIPLTIGQSLIWLGTALLSQTVPAELPMQLAAVAINSLL HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH SLILLFAVSPVLELSFGYSTRFRLMELMSLEQPLMQELMVTVPGTYHHSLVVSNMVEAGA HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH KAIGANSLLCKVAALYHDVGKLSYPEYFIENQFGGPNKHDKLAPSMSALILLSHVKKGTE HHHCCHHHHHHHHHHHHHHHCCCCCHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH LAERYKLGQDIADIISQHHGTRLIRFFYQKALNMGEKPRESDYSYVGPRPQTKEAAILML HHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEE ADSVEASSRTLTDPTPARIKSHIDTIIKGIFSEGQLDESELTFKDLHYLSENFQRILTGI ECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHH FHQRIAYPDAKIRDVAKAAGRPEGRAEGKGGQPATSAAAPAGQTRQHSRASADSVASGSL HHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCHHHHCCCCC SGGPVAADAGRVAEAPGALPAAAGEHAPGLREAPDAAGMPTAEKPAVTDTTEEDGPVAGI CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECC SRNGPSGNGTR CCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 8969508; 9384377 [H]