Click here to switch to the map view.

The map label for this gene is 220904823

Identifier: 220904823

GI number: 220904823

Start: 1869651

End: 1870121

Strand: Reverse

Name: 220904823

Synonym: Ddes_1556

Alternate gene names: NA

Gene position: 1870121-1869651 (Counterclockwise)

Preceding gene: 220904824

Following gene: 220904821

Centisome position: 65.08

GC content: 62.85

Gene sequence:

>471_bases
GTGAAGCCGCATCCGGAAGCCGTGCGTGTTTTTCGCCGCTATCCGTCAGGATGCGCGCTTGCGCCGCTGCACTGGCGTCA
GATGCGCACTGCCCTGCATGCCATGCTGACTGTGCCGTCTGCGCCGGGTGAGGCGCAGGCCCCTGAAGGGGTGGAGCTGT
ATCTGCTGGATGATGCGTCAGTAGCAAGGGCCAATGCCGGGCATCTCGGCTGTACGGGACCCACCAATATTCTTTCTTTT
CCCGGCGGGTCCGGTTCTCCCGGCGCTCTGCTGCTTTCCCTGGATACACTGCGGCGGGAATGTCTGCTGTACGGGCAGGA
CCCGGCCGAACATGCCGTGCGGCTTTTGGCTCACGGTATGGGCCATTTGCGAGGCCTGGACCACGGCCCGGTTATGGATG
CTCTTTGTGAGCGCCATATGGAGGCTGCCTGGGCAGCCTTGTGTGACGAAGAGGCGTGTCGGAGTACCTAA

Upstream 100 bases:

>100_bases
GTATGCCTACTGCAGAAAAACCCGCCGTGACAGATACAACGGAAGAGGACGGTCCGGTGGCCGGAATCTCCCGCAACGGG
CCTTCGGGCAATGGCACGCG

Downstream 100 bases:

>100_bases
GGGCTGTGATGCCATGTATCTTGCTGAAATGTTTTTGAATATGTAAACAGGCATGCCCGTACATCTGCCGCAGGCGGCTT
TTGGCTGCCGCAAAACGGCA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 156; Mature: 156

Protein sequence:

>156_residues
MKPHPEAVRVFRRYPSGCALAPLHWRQMRTALHAMLTVPSAPGEAQAPEGVELYLLDDASVARANAGHLGCTGPTNILSF
PGGSGSPGALLLSLDTLRRECLLYGQDPAEHAVRLLAHGMGHLRGLDHGPVMDALCERHMEAAWAALCDEEACRST

Sequences:

>Translated_156_residues
MKPHPEAVRVFRRYPSGCALAPLHWRQMRTALHAMLTVPSAPGEAQAPEGVELYLLDDASVARANAGHLGCTGPTNILSF
PGGSGSPGALLLSLDTLRRECLLYGQDPAEHAVRLLAHGMGHLRGLDHGPVMDALCERHMEAAWAALCDEEACRST
>Mature_156_residues
MKPHPEAVRVFRRYPSGCALAPLHWRQMRTALHAMLTVPSAPGEAQAPEGVELYLLDDASVARANAGHLGCTGPTNILSF
PGGSGSPGALLLSLDTLRRECLLYGQDPAEHAVRLLAHGMGHLRGLDHGPVMDALCERHMEAAWAALCDEEACRST

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity [H]

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023091
- InterPro:   IPR002036 [H]

Pfam domain/function: PF02130 UPF0054 [H]

EC number: NA

Molecular weight: Translated: 16711; Mature: 16711

Theoretical pI: Translated: 6.59; Mature: 6.59

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

3.8 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
7.7 %Cys+Met (Translated Protein)
3.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
7.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKPHPEAVRVFRRYPSGCALAPLHWRQMRTALHAMLTVPSAPGEAQAPEGVELYLLDDAS
CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCH
VARANAGHLGCTGPTNILSFPGGSGSPGALLLSLDTLRRECLLYGQDPAEHAVRLLAHGM
HHHCCCCCCCCCCCCCEEECCCCCCCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHH
GHLRGLDHGPVMDALCERHMEAAWAALCDEEACRST
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MKPHPEAVRVFRRYPSGCALAPLHWRQMRTALHAMLTVPSAPGEAQAPEGVELYLLDDAS
CCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCH
VARANAGHLGCTGPTNILSFPGGSGSPGALLLSLDTLRRECLLYGQDPAEHAVRLLAHGM
HHHCCCCCCCCCCCCCEEECCCCCCCCCEEEEEHHHHHHHHHCCCCCHHHHHHHHHHHHH
GHLRGLDHGPVMDALCERHMEAAWAALCDEEACRST
HHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA