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The map label for this gene is hypA1 [H]

Identifier: 220904766

GI number: 220904766

Start: 1789772

End: 1790125

Strand: Reverse

Name: hypA1 [H]

Synonym: Ddes_1498

Alternate gene names: 220904766

Gene position: 1790125-1789772 (Counterclockwise)

Preceding gene: 220904769

Following gene: 220904765

Centisome position: 62.3

GC content: 56.78

Gene sequence:

>354_bases
ATGCACGAAATGGCTATCGCACAGAGCTTGCTGAAAATGGCGGAAGAGGAAATTACCCGTCAGGGCTGTACCCGTCTTGA
GGTGGTGAACGTCAAATATGGCGCTCTCGCCGGACTGGTGCCGGAATCTCTTCAATTCTGCTTTGAAACCATGATTCAGG
GTACGCCCCACGAGGGTGCGCGCCTTGAAATGGAAGAATTGCCGTTGCAACTGCACTGCCCTTTTTGCGGCGCAGACTTT
GGCGGTGAAGGGCAGGATGCTCTTGTACAACCCTGCCCCGGCTGCGGTGAGCAGTTCGGCCATGTGGTCAAGCAGGGCAG
GGAGCTGTACCTGAACCGCCTTGAGGCCAGCTGA

Upstream 100 bases:

>100_bases
ATTTTGAGCGACGCATGCCCGAAATGTACATTATTTACGCCGAATGGCAAGAATGGCTTACGGCCTTTACGTGGCAGGGC
CTTTGAGCTAGTATGCCGCC

Downstream 100 bases:

>100_bases
CCGGAACCGGATCGGGCATCAGCCCCGGGCAGTACAGGGCGCTGCACAAATGCGGCGGCTTTCTTGTCGATGGCACTTTT
TTAACGATCTATATCATTCA

Product: hydrogenase expression/synthesis HypA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 117; Mature: 117

Protein sequence:

>117_residues
MHEMAIAQSLLKMAEEEITRQGCTRLEVVNVKYGALAGLVPESLQFCFETMIQGTPHEGARLEMEELPLQLHCPFCGADF
GGEGQDALVQPCPGCGEQFGHVVKQGRELYLNRLEAS

Sequences:

>Translated_117_residues
MHEMAIAQSLLKMAEEEITRQGCTRLEVVNVKYGALAGLVPESLQFCFETMIQGTPHEGARLEMEELPLQLHCPFCGADF
GGEGQDALVQPCPGCGEQFGHVVKQGRELYLNRLEAS
>Mature_117_residues
MHEMAIAQSLLKMAEEEITRQGCTRLEVVNVKYGALAGLVPESLQFCFETMIQGTPHEGARLEMEELPLQLHCPFCGADF
GGEGQDALVQPCPGCGEQFGHVVKQGRELYLNRLEAS

Specific function: Probably plays a role in an hydrogenase nickel cofactor insertion step [H]

COG id: COG0375

COG function: function code R; Zn finger protein HypA/HybF (possibly regulating hydrogenase expression)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the hypA/hybF family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000688
- InterPro:   IPR020538 [H]

Pfam domain/function: PF01155 HypA [H]

EC number: NA

Molecular weight: Translated: 12865; Mature: 12865

Theoretical pI: Translated: 4.47; Mature: 4.47

Prosite motif: PS01249 HYPA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

5.1 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
9.4 %Cys+Met (Translated Protein)
5.1 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
9.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHEMAIAQSLLKMAEEEITRQGCTRLEVVNVKYGALAGLVPESLQFCFETMIQGTPHEGA
CCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHCCHHHHHHHHHHHHCCCCCCCC
RLEMEELPLQLHCPFCGADFGGEGQDALVQPCPGCGEQFGHVVKQGRELYLNRLEAS
CCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure
MHEMAIAQSLLKMAEEEITRQGCTRLEVVNVKYGALAGLVPESLQFCFETMIQGTPHEGA
CCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHCCHHHHHHHHHHHHCCCCCCCC
RLEMEELPLQLHCPFCGADFGGEGQDALVQPCPGCGEQFGHVVKQGRELYLNRLEAS
CCCHHHCCEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA