| Definition | Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774 chromosome, complete genome. |
|---|---|
| Accession | NC_011883 |
| Length | 2,873,437 |
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The map label for this gene is yyaJ [H]
Identifier: 220904682
GI number: 220904682
Start: 1691787
End: 1693121
Strand: Direct
Name: yyaJ [H]
Synonym: Ddes_1414
Alternate gene names: 220904682
Gene position: 1691787-1693121 (Clockwise)
Preceding gene: 220904680
Following gene: 220904683
Centisome position: 58.88
GC content: 53.33
Gene sequence:
>1335_bases ATGCCCGGCCAAGAAAAAATCAGCAACAACTACTTCGACGGACTAAAAGTCTGCGGTCGCCATAAAGCAGTGTTCTTCAT CATAATGGTGGCCTACTTTTGTGAACAAATGGATAACTGGAACTTCGGCTTCATTGCCCCGGCCCTGATGCAGCACTGGG GGCTGACCATGAAGGATATCGGCACGGTTACCTTCTGGTATTTTGCGGCAATGACCTGCGGCGGATTTGCGGGGGGCTTT ATTTCTGACATGATCGGCCGCCGCAAAACATTTCTGATCGCCATCACGCTGTTTTCCACAGCCTCCATTATCAATGGACT TACTGACGATTTTCACGTTTTTGTGGCCTCACGCGCACTCACGGGCTTTGGTGTCTTCTGCCTCATGGTGTGCTCACAAG CCTATATCGCCGAGATGGCTCCGGCAGAAAGCCGGGGCAAGTGGCAAAACCTTGTGGCAGGCGTGGGTTTTTGTGCGGTA CCCGTTATCGGCCTGCTCTGCCGGGTTATTATTCCTCTGCATGAAGAGGCCTGGCGCTATATTTTCTACCTGGGCGGCAT TGGCTACATTGCCCTGTTCATCGCCTGGAAATATCTGGACGAATCACCGCGCTGGCTTGTGAGCCGGGGCCGCATTAAAG AAGCCGAAGCGGTCATGCTTGACCTCACCCACATGAACATCGACCTTTCTGCGGCAGCCGCCAGGGTCAACACCAGCAAA CCGCCTATCAAGGAAGTACTGCTGGGCATGATCAGCCAGAAGTACATAAAGCGCACCCTGGTCATTCTGGTGATTGTGCT CTGCACCAATCCGGCAACATTTGTTGTGACCAACTGGACAGCCACCCTGCTCAAGGCACACGGTTTTTCTCTTGAACAGT GCCTTATGGCCACTACGCTGATTTCCATCGGCGTTCCCCTTGGCCTCTTTGCTTCCAGCGCCTTTACAGACCTTGGCGGA CGCAAGATTCCCCTGGTCATCATGCTTGTCTGCATGGCGATTCTTGCGCCCATATTCGGCAACGTCAGCCATTACTGGGT CGTCGTGTCCGTAGGTGCGCTGCTCACCGCTTTTGTCATGGGCCTGGGATTCACCGTTTTTTCGTACACTGCAGAATCCT ATCCGACACATCTGCGAAATACCGCGACAGGCTTTCACTCTTCCATCGGACGCCTTGCGGTAGCTTTTTCACAACCTCTC ATTCCTGTTGTGTATGCAGCATACAGCTTTGACGGCGTGTTCTATATCTTTAGCGCGCTTTGCGTTGTCCCCGCCATTGT ACTGGCCATATGGGGAGCACGTACGGGCGGCAAGTCCCTTGAGGATATTGCCTAA
Upstream 100 bases:
>100_bases CCACCAACAAACTATTAATAGCACAACCTCCTTCTCCCGTTGATGTTTTGCAAAAAGACTGAAAAATTCAGGCACAGACA AGAGCCAAAAGGGGAAATCC
Downstream 100 bases:
>100_bases AACAATTGCATAAACCTTCCTGAGGCCGCGGCGCGAGCAGATGCGTAAAGCCTGCCCGCGCCGCGCGGCCTTTAACGGTA AACCGCCAAGGAGTATTGCC
Product: major facilitator superfamily protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 444; Mature: 443
Protein sequence:
>444_residues MPGQEKISNNYFDGLKVCGRHKAVFFIIMVAYFCEQMDNWNFGFIAPALMQHWGLTMKDIGTVTFWYFAAMTCGGFAGGF ISDMIGRRKTFLIAITLFSTASIINGLTDDFHVFVASRALTGFGVFCLMVCSQAYIAEMAPAESRGKWQNLVAGVGFCAV PVIGLLCRVIIPLHEEAWRYIFYLGGIGYIALFIAWKYLDESPRWLVSRGRIKEAEAVMLDLTHMNIDLSAAAARVNTSK PPIKEVLLGMISQKYIKRTLVILVIVLCTNPATFVVTNWTATLLKAHGFSLEQCLMATTLISIGVPLGLFASSAFTDLGG RKIPLVIMLVCMAILAPIFGNVSHYWVVVSVGALLTAFVMGLGFTVFSYTAESYPTHLRNTATGFHSSIGRLAVAFSQPL IPVVYAAYSFDGVFYIFSALCVVPAIVLAIWGARTGGKSLEDIA
Sequences:
>Translated_444_residues MPGQEKISNNYFDGLKVCGRHKAVFFIIMVAYFCEQMDNWNFGFIAPALMQHWGLTMKDIGTVTFWYFAAMTCGGFAGGF ISDMIGRRKTFLIAITLFSTASIINGLTDDFHVFVASRALTGFGVFCLMVCSQAYIAEMAPAESRGKWQNLVAGVGFCAV PVIGLLCRVIIPLHEEAWRYIFYLGGIGYIALFIAWKYLDESPRWLVSRGRIKEAEAVMLDLTHMNIDLSAAAARVNTSK PPIKEVLLGMISQKYIKRTLVILVIVLCTNPATFVVTNWTATLLKAHGFSLEQCLMATTLISIGVPLGLFASSAFTDLGG RKIPLVIMLVCMAILAPIFGNVSHYWVVVSVGALLTAFVMGLGFTVFSYTAESYPTHLRNTATGFHSSIGRLAVAFSQPL IPVVYAAYSFDGVFYIFSALCVVPAIVLAIWGARTGGKSLEDIA >Mature_443_residues PGQEKISNNYFDGLKVCGRHKAVFFIIMVAYFCEQMDNWNFGFIAPALMQHWGLTMKDIGTVTFWYFAAMTCGGFAGGFI SDMIGRRKTFLIAITLFSTASIINGLTDDFHVFVASRALTGFGVFCLMVCSQAYIAEMAPAESRGKWQNLVAGVGFCAVP VIGLLCRVIIPLHEEAWRYIFYLGGIGYIALFIAWKYLDESPRWLVSRGRIKEAEAVMLDLTHMNIDLSAAAARVNTSKP PIKEVLLGMISQKYIKRTLVILVIVLCTNPATFVVTNWTATLLKAHGFSLEQCLMATTLISIGVPLGLFASSAFTDLGGR KIPLVIMLVCMAILAPIFGNVSHYWVVVSVGALLTAFVMGLGFTVFSYTAESYPTHLRNTATGFHSSIGRLAVAFSQPLI PVVYAAYSFDGVFYIFSALCVVPAIVLAIWGARTGGKSLEDIA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Probable) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the major facilitator superfamily. Sugar transporter (TC 2.A.1.1) family [H]
Homologues:
Organism=Homo sapiens, GI213021148, Length=461, Percent_Identity=26.8980477223427, Blast_Score=91, Evalue=3e-18, Organism=Homo sapiens, GI203098995, Length=164, Percent_Identity=27.4390243902439, Blast_Score=73, Evalue=5e-13, Organism=Homo sapiens, GI24497490, Length=370, Percent_Identity=21.8918918918919, Blast_Score=66, Evalue=6e-11, Organism=Homo sapiens, GI4507005, Length=427, Percent_Identity=22.4824355971897, Blast_Score=66, Evalue=8e-11, Organism=Escherichia coli, GI1788068, Length=379, Percent_Identity=29.023746701847, Blast_Score=160, Evalue=1e-40, Organism=Escherichia coli, GI1788074, Length=384, Percent_Identity=26.3020833333333, Blast_Score=139, Evalue=4e-34, Organism=Escherichia coli, GI1786229, Length=448, Percent_Identity=21.875, Blast_Score=82, Evalue=6e-17, Organism=Escherichia coli, GI87082159, Length=343, Percent_Identity=25.9475218658892, Blast_Score=79, Evalue=5e-16, Organism=Escherichia coli, GI1789312, Length=346, Percent_Identity=21.9653179190751, Blast_Score=65, Evalue=8e-12, Organism=Escherichia coli, GI87081723, Length=349, Percent_Identity=24.0687679083095, Blast_Score=63, Evalue=4e-11, Organism=Caenorhabditis elegans, GI32564663, Length=438, Percent_Identity=23.0593607305936, Blast_Score=75, Evalue=7e-14, Organism=Caenorhabditis elegans, GI25145172, Length=361, Percent_Identity=24.9307479224377, Blast_Score=69, Evalue=4e-12, Organism=Saccharomyces cerevisiae, GI6319718, Length=382, Percent_Identity=23.8219895287958, Blast_Score=66, Evalue=1e-11, Organism=Drosophila melanogaster, GI24652793, Length=459, Percent_Identity=23.3115468409586, Blast_Score=75, Evalue=8e-14, Organism=Drosophila melanogaster, GI24652795, Length=392, Percent_Identity=23.469387755102, Blast_Score=75, Evalue=9e-14,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR020846 - InterPro: IPR016196 - InterPro: IPR005828 [H]
Pfam domain/function: PF00083 Sugar_tr [H]
EC number: NA
Molecular weight: Translated: 48583; Mature: 48452
Theoretical pI: Translated: 8.46; Mature: 8.46
Prosite motif: PS50850 MFS ; PS00216 SUGAR_TRANSPORT_1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.5 %Cys (Translated Protein) 3.6 %Met (Translated Protein) 6.1 %Cys+Met (Translated Protein) 2.5 %Cys (Mature Protein) 3.4 %Met (Mature Protein) 5.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPGQEKISNNYFDGLKVCGRHKAVFFIIMVAYFCEQMDNWNFGFIAPALMQHWGLTMKDI CCCHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHH GTVTFWYFAAMTCGGFAGGFISDMIGRRKTFLIAITLFSTASIINGLTDDFHVFVASRAL HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHEEEEHHHHHHHHHHHCCCCHHHHHHHHHHH TGFGVFCLMVCSQAYIAEMAPAESRGKWQNLVAGVGFCAVPVIGLLCRVIIPLHEEAWRY HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IFYLGGIGYIALFIAWKYLDESPRWLVSRGRIKEAEAVMLDLTHMNIDLSAAAARVNTSK HHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHEEEEEECCEEHHHHHHHCCCCC PPIKEVLLGMISQKYIKRTLVILVIVLCTNPATFVVTNWTATLLKAHGFSLEQCLMATTL CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCCHHHHHHHHHH ISIGVPLGLFASSAFTDLGGRKIPLVIMLVCMAILAPIFGNVSHYWVVVSVGALLTAFVM HHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH GLGFTVFSYTAESYPTHLRNTATGFHSSIGRLAVAFSQPLIPVVYAAYSFDGVFYIFSAL HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHH CVVPAIVLAIWGARTGGKSLEDIA HHHHHHHHHHHCCCCCCCCHHHCC >Mature Secondary Structure PGQEKISNNYFDGLKVCGRHKAVFFIIMVAYFCEQMDNWNFGFIAPALMQHWGLTMKDI CCHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHH GTVTFWYFAAMTCGGFAGGFISDMIGRRKTFLIAITLFSTASIINGLTDDFHVFVASRAL HHHHHHHHHHHHHCCCCHHHHHHHHCCCHHEEEEHHHHHHHHHHHCCCCHHHHHHHHHHH TGFGVFCLMVCSQAYIAEMAPAESRGKWQNLVAGVGFCAVPVIGLLCRVIIPLHEEAWRY HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IFYLGGIGYIALFIAWKYLDESPRWLVSRGRIKEAEAVMLDLTHMNIDLSAAAARVNTSK HHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHEEEEEECCEEHHHHHHHCCCCC PPIKEVLLGMISQKYIKRTLVILVIVLCTNPATFVVTNWTATLLKAHGFSLEQCLMATTL CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHCCCCHHHHHHHHHH ISIGVPLGLFASSAFTDLGGRKIPLVIMLVCMAILAPIFGNVSHYWVVVSVGALLTAFVM HHHCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH GLGFTVFSYTAESYPTHLRNTATGFHSSIGRLAVAFSQPLIPVVYAAYSFDGVFYIFSAL HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCHHHHHHHHH CVVPAIVLAIWGARTGGKSLEDIA HHHHHHHHHHHCCCCCCCCHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: 7584024; 8011666; 9384377 [H]