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The map label for this gene is yedQ [C]

Identifier: 220904678

GI number: 220904678

Start: 1685605

End: 1686798

Strand: Direct

Name: yedQ [C]

Synonym: Ddes_1410

Alternate gene names: 220904678

Gene position: 1685605-1686798 (Clockwise)

Preceding gene: 220904677

Following gene: 220904680

Centisome position: 58.66

GC content: 49.33

Gene sequence:

>1194_bases
ATGCTTCAAAATCAACACAAAAACCGGACAAACAGCAAGCCTGTTTCCAAACCGCTGTTCGGAACAGAGCGGAAAATTTT
GCTGTTGGTCATAACATCCATATTTTCCACAGCGTTATTCACTGTTTTTGTTTTCCATCACTATCTTTCCTCTGATCTCA
ATTACAGGATACTGAGCCGCTCGGACGCCATTTTTTCCTTGCTGCTAAGCCGTATCCCGGCCCAGAGCGTCACTGACATC
AATACTCCTGACGACAGTCACGAAATTTTATACAAACGGGTACAAACCCTTCTTGATGGAGTGCGCAAAACCACGGCCGT
ACGCTACCTGTACACAGCAAAGCGTAACGCCGAAGGCCGGGCCATCTATGTCGTTGATGGTCTGCCGCCTGACTCTGAAG
ATTTTCGGCAAGCGGGAAATCTCATTGAGGACGAAGTGGCACCTGTGGCAAACATCTGTCTTGACGGCAAGTCCTTCCTT
GGAACAAAGGTAATGGACACCTCTTGGGGCAAAATCATTCCCGCCTGTGAGCCCATCAAACTGAACGGCATTACAGTCGG
CGCGCTGATTATCGAGTTTGACGTCAACTCCTTTGCTGAAAGCGCACGGCGCTCTTCATTGATCTGCCTGGCCTTTTCCA
TTGGCTTTGCCATGGCGGCGGCCACAGTCACCACATGGCTTTTGCGTAAACTTTCCGTCCCCCTTTACAGAAAACTAGCC
TACACCGACCTGCTTACGGGAACACTCAACCGCAATGCCTTTGAAGAAAAAATCCGCAAGATCGATGAAGAATGCCAGCA
AGATGGCCTAGTCATACTGACCTGTGACATCAACATGCTCAAAACAATCAACGATCAGGGCGGCCATGCGGCTGGAGATG
CCCATATCTGCGCTCTGGCCCGTCTGCTGGAAAACCACCTCATGGCTTTTGGAAAAACATACCGCATCGGCGGCGATGAA
TTCGCTTCGCTGCTGTACAACCTTCCGCCAGAAAAACTGGAAGAGAAAATGAAAAACTTGTTTTCTCTGACACAAAAAAT
GCAGATCAGCGGTTTTCGCCTTGAATTCGCCTACGGAATGGCCCAGTTTGACTCCAGGCAGGACAAGGACGTGCAAAATA
CCCTGAAACGCGCGGATGCCAGAATGTACGCCCACAAAAGCCTGCTCAAACAAACGGGAAGTAATACTCTATAA

Upstream 100 bases:

>100_bases
CATTTCGCGGCATACTCATTGCTGGGGACGGAAAAACATTGTCATTGCTAACAATTCATTTTAGCATTCTGATAGCATCG
ATATACTATGGGGTATAGTA

Downstream 100 bases:

>100_bases
CTTCGGGTGCAGCACGCCATCCACAACGCCCCCCGCAGGCATGCCTGCGGGGGGCGTTGTGGATGGCGAATATCCAGCCG
GGTTCAGGCCAAAGGTGGCA

Product: diguanylate cyclase

Products: NA

Alternate protein names: Diguanylate Cyclase And Metal Dependent Phosphohydrolase; Diguanylate Cyclase With PAS/PAC Sensor; Diguanylate Cyclase With GAF Sensor; GGDEF Domain-Containing Protein; Diguanylate Cyclase/Phosphodiesterase; Diguanylate Cyclase Domain Protein; GGDEF Family Protein; GGDEF Domain Protein; Ggdef Domain Protein; 7TM Domain Sensor Diguanylate Cyclase; Signal Transduction Protein; Response Regulator PleD; Signaling Protein; Sensory Box/GGDEF Family Protein; Sensor Histidine Kinase; GAF/GGDEF-Domain-Containing Protein; Diguanylate Cyclase/Phosphodiesterase With PAS/PAC Sensor; Response Regulator-Like Protein; Ggdef Family Protein; GGDEF/PAS/PAC-Domain-Containing Protein; GGDEF Domain-Containing Diguanylate Cyclase; Transmembrane Protein; Diguanylate Cyclase With PAS/PAC And Chase2 Sensors; GGDEF/PAS Domain-Containing Protein; PAS Sensor Diguanylate Cyclase And Phophodiesterase; Signal Transduction Response Regulator; PASGGDEF Domain Protein; Sensory Box/Ggdef Family Protein; Response Regulator Receiver; Transport/Signal Transduction System Protein; GGDEF Domain Signaling Protein; YaiC/YhcK/ArdA Family Protein; Sensory Box-Containing Diguanylate Cyclase; Signal Protein; Intracellular Signaling Protein; Metal Dependent Phosphohydrolase; Sensory Box Protein; GGDEF Domain Signalling Protein; Sensory Box/Response Regulator; Gaf/Ggdef-Domain Containing Protein; Sensory Box Sensor/GGDEF/EAL Domain-Containing Protein; Regulator Protein; Diguanylate Cyclase/Phosphodiesterase With; Response Regulator Receiver Protein; EAL Domain-Containing Protein; GGDEF/EAL Domain-Containing Protein

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MLQNQHKNRTNSKPVSKPLFGTERKILLLVITSIFSTALFTVFVFHHYLSSDLNYRILSRSDAIFSLLLSRIPAQSVTDI
NTPDDSHEILYKRVQTLLDGVRKTTAVRYLYTAKRNAEGRAIYVVDGLPPDSEDFRQAGNLIEDEVAPVANICLDGKSFL
GTKVMDTSWGKIIPACEPIKLNGITVGALIIEFDVNSFAESARRSSLICLAFSIGFAMAAATVTTWLLRKLSVPLYRKLA
YTDLLTGTLNRNAFEEKIRKIDEECQQDGLVILTCDINMLKTINDQGGHAAGDAHICALARLLENHLMAFGKTYRIGGDE
FASLLYNLPPEKLEEKMKNLFSLTQKMQISGFRLEFAYGMAQFDSRQDKDVQNTLKRADARMYAHKSLLKQTGSNTL

Sequences:

>Translated_397_residues
MLQNQHKNRTNSKPVSKPLFGTERKILLLVITSIFSTALFTVFVFHHYLSSDLNYRILSRSDAIFSLLLSRIPAQSVTDI
NTPDDSHEILYKRVQTLLDGVRKTTAVRYLYTAKRNAEGRAIYVVDGLPPDSEDFRQAGNLIEDEVAPVANICLDGKSFL
GTKVMDTSWGKIIPACEPIKLNGITVGALIIEFDVNSFAESARRSSLICLAFSIGFAMAAATVTTWLLRKLSVPLYRKLA
YTDLLTGTLNRNAFEEKIRKIDEECQQDGLVILTCDINMLKTINDQGGHAAGDAHICALARLLENHLMAFGKTYRIGGDE
FASLLYNLPPEKLEEKMKNLFSLTQKMQISGFRLEFAYGMAQFDSRQDKDVQNTLKRADARMYAHKSLLKQTGSNTL
>Mature_397_residues
MLQNQHKNRTNSKPVSKPLFGTERKILLLVITSIFSTALFTVFVFHHYLSSDLNYRILSRSDAIFSLLLSRIPAQSVTDI
NTPDDSHEILYKRVQTLLDGVRKTTAVRYLYTAKRNAEGRAIYVVDGLPPDSEDFRQAGNLIEDEVAPVANICLDGKSFL
GTKVMDTSWGKIIPACEPIKLNGITVGALIIEFDVNSFAESARRSSLICLAFSIGFAMAAATVTTWLLRKLSVPLYRKLA
YTDLLTGTLNRNAFEEKIRKIDEECQQDGLVILTCDINMLKTINDQGGHAAGDAHICALARLLENHLMAFGKTYRIGGDE
FASLLYNLPPEKLEEKMKNLFSLTQKMQISGFRLEFAYGMAQFDSRQDKDVQNTLKRADARMYAHKSLLKQTGSNTL

Specific function: Unknown

COG id: COG2199

COG function: function code T; FOG: GGDEF domain

Gene ontology:

Cell location: Integral membrane protein (Potential) [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082007, Length=203, Percent_Identity=27.0935960591133, Blast_Score=65, Evalue=7e-12,
Organism=Escherichia coli, GI87081881, Length=155, Percent_Identity=32.258064516129, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 44460; Mature: 44460

Theoretical pI: Translated: 8.73; Mature: 8.73

Prosite motif: PS50887 GGDEF

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLQNQHKNRTNSKPVSKPLFGTERKILLLVITSIFSTALFTVFVFHHYLSSDLNYRILSR
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
SDAIFSLLLSRIPAQSVTDINTPDDSHEILYKRVQTLLDGVRKTTAVRYLYTAKRNAEGR
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
AIYVVDGLPPDSEDFRQAGNLIEDEVAPVANICLDGKSFLGTKVMDTSWGKIIPACEPIK
EEEEECCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCHHHHCCEEECCCCCCCCCCCCCEE
LNGITVGALIIEFDVNSFAESARRSSLICLAFSIGFAMAAATVTTWLLRKLSVPLYRKLA
ECCEEEEEEEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
YTDLLTGTLNRNAFEEKIRKIDEECQQDGLVILTCDINMLKTINDQGGHAAGDAHICALA
HHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHCCCCCCCCCCHHHHHHHH
RLLENHLMAFGKTYRIGGDEFASLLYNLPPEKLEEKMKNLFSLTQKMQISGFRLEFAYGM
HHHHHHHHHHCCEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHH
AQFDSRQDKDVQNTLKRADARMYAHKSLLKQTGSNTL
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure
MLQNQHKNRTNSKPVSKPLFGTERKILLLVITSIFSTALFTVFVFHHYLSSDLNYRILSR
CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECC
SDAIFSLLLSRIPAQSVTDINTPDDSHEILYKRVQTLLDGVRKTTAVRYLYTAKRNAEGR
HHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
AIYVVDGLPPDSEDFRQAGNLIEDEVAPVANICLDGKSFLGTKVMDTSWGKIIPACEPIK
EEEEECCCCCCHHHHHHHCCHHHHHHHHHHHHHCCCHHHHCCEEECCCCCCCCCCCCCEE
LNGITVGALIIEFDVNSFAESARRSSLICLAFSIGFAMAAATVTTWLLRKLSVPLYRKLA
ECCEEEEEEEEEECHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHH
YTDLLTGTLNRNAFEEKIRKIDEECQQDGLVILTCDINMLKTINDQGGHAAGDAHICALA
HHHHHHHHCCCHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHCCCCCCCCCCHHHHHHHH
RLLENHLMAFGKTYRIGGDEFASLLYNLPPEKLEEKMKNLFSLTQKMQISGFRLEFAYGM
HHHHHHHHHHCCEEECCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCEEEHHHHHH
AQFDSRQDKDVQNTLKRADARMYAHKSLLKQTGSNTL
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA