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The map label for this gene is rnfA [H]

Identifier: 220904511

GI number: 220904511

Start: 1456569

End: 1457141

Strand: Direct

Name: rnfA [H]

Synonym: Ddes_1242

Alternate gene names: 220904511

Gene position: 1456569-1457141 (Clockwise)

Preceding gene: 220904510

Following gene: 220904512

Centisome position: 50.69

GC content: 52.53

Gene sequence:

>573_bases
ATGGATATTTTCGCCATCTTTATCTCGGCCATCTTCGTAAACAATATTGTGTTGGCCCAGTATCTCGGCAACTGCCCGTA
TGTGGGATGCTCTAAAGAAAAAGGCGTAGCCCTCGGCATGGGTGGCGCGGTAGTTTTTGTAACCATTGCCGCCACGCTTT
GCACTTGGCTCATGCAGAAATATGTGCTCGACCCCTACGGGCTGGGGTATCTGCAAACCATCGTTTTTATCGTTGTCATC
GCGGCATTGGTGCAGTTTGTTGAAATGTTTCTCAAAAAAATTGTGCCGCCGCTTTACGCCGCCCTGGGTATTTTTTTGCC
GCTCATTACCACCAACTGCGCGGTTATGGGGGTTGCCATTCTGGTACAGCGTGAAGGCTATGGTTTGATGGAATCTCTGG
TATGGGCGCTGGCCTACGGCCTGGGATTCACTCTGGCGCTGCTGCTGATGGCAGCCATCCGCGAAAGGCTGGACACCTGT
CGTCTGCCCAAGGCCATGGCCGGTACGCCGCTGGCTCTTGTTATGGCTGGCCTTATGTCACTGGCTTTCATGGGCTTTAA
AGGAATGGGATAA

Upstream 100 bases:

>100_bases
TGCCCGACTGCAACGCCACGGCAACAAGCAGGACCTGAAAGGCTGTCGCTGGCAGGTGTGATCTCAAAGCGAAACCGCTC
TAAAGGCACAAGGATAGCGC

Downstream 100 bases:

>100_bases
AGGGCGGCCAGCACGCGCCACAGCACTCAACAAGACTTTGGCGCGTGACTACGGCTGATCGGTCAATTCTGCTGTACAGC
AGTTACGTTAGACGGGGACG

Product: RnfABCDGE type electron transport complex subunit A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 190; Mature: 190

Protein sequence:

>190_residues
MDIFAIFISAIFVNNIVLAQYLGNCPYVGCSKEKGVALGMGGAVVFVTIAATLCTWLMQKYVLDPYGLGYLQTIVFIVVI
AALVQFVEMFLKKIVPPLYAALGIFLPLITTNCAVMGVAILVQREGYGLMESLVWALAYGLGFTLALLLMAAIRERLDTC
RLPKAMAGTPLALVMAGLMSLAFMGFKGMG

Sequences:

>Translated_190_residues
MDIFAIFISAIFVNNIVLAQYLGNCPYVGCSKEKGVALGMGGAVVFVTIAATLCTWLMQKYVLDPYGLGYLQTIVFIVVI
AALVQFVEMFLKKIVPPLYAALGIFLPLITTNCAVMGVAILVQREGYGLMESLVWALAYGLGFTLALLLMAAIRERLDTC
RLPKAMAGTPLALVMAGLMSLAFMGFKGMG
>Mature_190_residues
MDIFAIFISAIFVNNIVLAQYLGNCPYVGCSKEKGVALGMGGAVVFVTIAATLCTWLMQKYVLDPYGLGYLQTIVFIVVI
AALVQFVEMFLKKIVPPLYAALGIFLPLITTNCAVMGVAILVQREGYGLMESLVWALAYGLGFTLALLLMAAIRERLDTC
RLPKAMAGTPLALVMAGLMSLAFMGFKGMG

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG4657

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nqrDE/rnfAE family [H]

Homologues:

Organism=Escherichia coli, GI1787914, Length=188, Percent_Identity=48.936170212766, Blast_Score=184, Evalue=2e-48,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003667
- InterPro:   IPR011293 [H]

Pfam domain/function: PF02508 Rnf-Nqr [H]

EC number: NA

Molecular weight: Translated: 20421; Mature: 20421

Theoretical pI: Translated: 8.45; Mature: 8.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
6.3 %Met     (Translated Protein)
8.9 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
6.3 %Met     (Mature Protein)
8.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDIFAIFISAIFVNNIVLAQYLGNCPYVGCSKEKGVALGMGGAVVFVTIAATLCTWLMQK
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHH
YVLDPYGLGYLQTIVFIVVIAALVQFVEMFLKKIVPPLYAALGIFLPLITTNCAVMGVAI
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVQREGYGLMESLVWALAYGLGFTLALLLMAAIRERLDTCRLPKAMAGTPLALVMAGLMS
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHH
LAFMGFKGMG
HHHHHCCCCC
>Mature Secondary Structure
MDIFAIFISAIFVNNIVLAQYLGNCPYVGCSKEKGVALGMGGAVVFVTIAATLCTWLMQK
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEECCHHHHHHHHHHHHHHHHHHH
YVLDPYGLGYLQTIVFIVVIAALVQFVEMFLKKIVPPLYAALGIFLPLITTNCAVMGVAI
HCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LVQREGYGLMESLVWALAYGLGFTLALLLMAAIRERLDTCRLPKAMAGTPLALVMAGLMS
HHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCHHHHHHHHHH
LAFMGFKGMG
HHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA