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The map label for this gene is rnfB [H]

Identifier: 220904512

GI number: 220904512

Start: 1457247

End: 1458158

Strand: Direct

Name: rnfB [H]

Synonym: Ddes_1243

Alternate gene names: 220904512

Gene position: 1457247-1458158 (Clockwise)

Preceding gene: 220904511

Following gene: 220904513

Centisome position: 50.71

GC content: 57.57

Gene sequence:

>912_bases
ATGGTCTTTGTATCGATTTTGACCCTTTTTGCCCTGGGCCTTGTGGCATCCATCATCCTGGCCGTGGCCTCGCGGGTTTT
TTATGTCAAGGAAGACCCGCGGGTTGAAGCCATAATGGAAGCCCTGCCGGGAGCAAACTGCGGTGGATGCGGTTTTGCCG
GGTGTGAAGGATACGCCGTTGCAGTGCTCAACGATCCGAACATTGCGGCAAACAAATGCTGTGCGGGGGGGCCGGAAGTA
AGCATCGCCGTGGGCGAACTCACCGGCAAAACCGTGGCCGAAGCCGAACCGTTGTACGCCCTGCGCCGCTGTGACAAGCA
GGCTGGCCAAGTTGGCGCGCGCTATGAATATCAGGGGCTGCCCTCGTGCGCCGCGGCTTCGCTCATGCGGGGCGGCACTG
ACTGTTGTGCCTTTTCCTGTATAGGGTACGGCGACTGTGTGCAGGCCTGCCCGTTCAATGCCATGCGTATTGTCAACGGA
CTTGTGGAAGTTGACCAGGATAAATGTACTGGTTGTGGTACTTGTGTAAACGTGTGCCCGCGCGGGGTTCTGGAAATGAC
GCCTCTACGGGCCAGAGTTGCTGTTTACTGCAATACTCGTGAAAAACTGCGGGCAGTTTCTGATGTATGCAAAGTAGGCT
GCATCAAGTGCCTAAAATGCGTGAAAGCCTGCCCGGCCAAGGCGGTAAGCATGGTCGATGACCGCATAGAAATAGACCAC
CTGCTTTGTCTTTCCTATGGCCCGGCCTGCCAAGAAGCGTGCGTATCCTCCTGCCCCAGGCACATCTTTAGATATACCAG
GCCGATTCAGGCTGTGGGGTGTGACGAGTCAGGCTGCAGTGAGCCGGCGCACACACCCCTTTCGGCTCCTGTACCTGATC
AGAACGTCTCCCAGGCGCAGCCTGGGGCCTGA

Upstream 100 bases:

>100_bases
GGCCAGCACGCGCCACAGCACTCAACAAGACTTTGGCGCGTGACTACGGCTGATCGGTCAATTCTGCTGTACAGCAGTTA
CGTTAGACGGGGACGAAACT

Downstream 100 bases:

>100_bases
ATGGAGGCAATATGTCCAGCTTTTTGAGCCGCCGTCATTTTCTTCGCTTCGCGCTTGTGAGCGCGGGCATGCTTGGGGCC
GCCCCGCTGCTGAGTCTTGC

Product: ferredoxin

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 303; Mature: 303

Protein sequence:

>303_residues
MVFVSILTLFALGLVASIILAVASRVFYVKEDPRVEAIMEALPGANCGGCGFAGCEGYAVAVLNDPNIAANKCCAGGPEV
SIAVGELTGKTVAEAEPLYALRRCDKQAGQVGARYEYQGLPSCAAASLMRGGTDCCAFSCIGYGDCVQACPFNAMRIVNG
LVEVDQDKCTGCGTCVNVCPRGVLEMTPLRARVAVYCNTREKLRAVSDVCKVGCIKCLKCVKACPAKAVSMVDDRIEIDH
LLCLSYGPACQEACVSSCPRHIFRYTRPIQAVGCDESGCSEPAHTPLSAPVPDQNVSQAQPGA

Sequences:

>Translated_303_residues
MVFVSILTLFALGLVASIILAVASRVFYVKEDPRVEAIMEALPGANCGGCGFAGCEGYAVAVLNDPNIAANKCCAGGPEV
SIAVGELTGKTVAEAEPLYALRRCDKQAGQVGARYEYQGLPSCAAASLMRGGTDCCAFSCIGYGDCVQACPFNAMRIVNG
LVEVDQDKCTGCGTCVNVCPRGVLEMTPLRARVAVYCNTREKLRAVSDVCKVGCIKCLKCVKACPAKAVSMVDDRIEIDH
LLCLSYGPACQEACVSSCPRHIFRYTRPIQAVGCDESGCSEPAHTPLSAPVPDQNVSQAQPGA
>Mature_303_residues
MVFVSILTLFALGLVASIILAVASRVFYVKEDPRVEAIMEALPGANCGGCGFAGCEGYAVAVLNDPNIAANKCCAGGPEV
SIAVGELTGKTVAEAEPLYALRRCDKQAGQVGARYEYQGLPSCAAASLMRGGTDCCAFSCIGYGDCVQACPFNAMRIVNG
LVEVDQDKCTGCGTCVNVCPRGVLEMTPLRARVAVYCNTREKLRAVSDVCKVGCIKCLKCVKACPAKAVSMVDDRIEIDH
LLCLSYGPACQEACVSSCPRHIFRYTRPIQAVGCDESGCSEPAHTPLSAPVPDQNVSQAQPGA

Specific function: May be part of a membrane complex involved in electron transport [H]

COG id: COG2878

COG function: function code C; Predicted NADH:ubiquinone oxidoreductase, subunit RnfB

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 4Fe-4S ferredoxin-type domains [H]

Homologues:

Organism=Escherichia coli, GI1787915, Length=190, Percent_Identity=33.1578947368421, Blast_Score=85, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001450
- InterPro:   IPR017896
- InterPro:   IPR017900
- InterPro:   IPR010207
- InterPro:   IPR016463
- InterPro:   IPR007202 [H]

Pfam domain/function: PF00037 Fer4; PF04060 FeS [H]

EC number: NA

Molecular weight: Translated: 31796; Mature: 31796

Theoretical pI: Translated: 6.22; Mature: 6.22

Prosite motif: PS00198 4FE4S_FERREDOXIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

9.2 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
11.2 %Cys+Met (Translated Protein)
9.2 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
11.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVFVSILTLFALGLVASIILAVASRVFYVKEDPRVEAIMEALPGANCGGCGFAGCEGYAV
CHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCEEE
AVLNDPNIAANKCCAGGPEVSIAVGELTGKTVAEAEPLYALRRCDKQAGQVGARYEYQGL
EEECCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEECCCC
PSCAAASLMRGGTDCCAFSCIGYGDCVQACPFNAMRIVNGLVEVDQDKCTGCGTCVNVCP
CHHHHHHHHHCCCHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHCC
RGVLEMTPLRARVAVYCNTREKLRAVSDVCKVGCIKCLKCVKACPAKAVSMVDDRIEIDH
CCHHHHCCHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LLCLSYGPACQEACVSSCPRHIFRYTRPIQAVGCDESGCSEPAHTPLSAPVPDQNVSQAQ
HHHHCCCHHHHHHHHHHHHHHHHHHCCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
PGA
CCC
>Mature Secondary Structure
MVFVSILTLFALGLVASIILAVASRVFYVKEDPRVEAIMEALPGANCGGCGFAGCEGYAV
CHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCCHHHHHHHHCCCCCCCCCCCCCCCCEEE
AVLNDPNIAANKCCAGGPEVSIAVGELTGKTVAEAEPLYALRRCDKQAGQVGARYEYQGL
EEECCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCEECCCC
PSCAAASLMRGGTDCCAFSCIGYGDCVQACPFNAMRIVNGLVEVDQDKCTGCGTCVNVCP
CHHHHHHHHHCCCHHHHHHHCCCHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHCC
RGVLEMTPLRARVAVYCNTREKLRAVSDVCKVGCIKCLKCVKACPAKAVSMVDDRIEIDH
CCHHHHCCHHEEEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
LLCLSYGPACQEACVSSCPRHIFRYTRPIQAVGCDESGCSEPAHTPLSAPVPDQNVSQAQ
HHHHCCCHHHHHHHHHHHHHHHHHHCCCHHEECCCCCCCCCCCCCCCCCCCCCCCCCCCC
PGA
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: Fe [C]

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA