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The map label for this gene is rpoZ

Identifier: 218905000

GI number: 218905000

Start: 3722687

End: 3722899

Strand: Reverse

Name: rpoZ

Synonym: BCAH820_3884

Alternate gene names: 218905000

Gene position: 3722899-3722687 (Counterclockwise)

Preceding gene: 218905001

Following gene: 218904999

Centisome position: 70.21

GC content: 33.33

Gene sequence:

>213_bases
ATGTTAAATCCATCAATTGATTCATTATTAACAAAAATCGATTCTAAATATACACTTGTAACAGTGGCTGCAAAACGTGC
GCGCGAAATGCAACTTGCTAATAACTGTGTTGTAGAAAAACCAGTTTCTCATAAATGTGTAGGTAAAGCATTAGAAGAAA
TCGATATGGAAGCGTTAAGCTACGTACCAAGTGAAGATAAAGTAACTGAATAA

Upstream 100 bases:

>100_bases
AACTAGCTTGTGAAAGAATTAAAGCAATTGTGGTTGGCGAACATTGCCGCCGCGAAAGAGTAGCAAAATATTATAAAGAA
ATGACGGAGGGTCTATAATT

Downstream 100 bases:

>100_bases
GACTTTGTCTTCGACAATTTAAAACATAGACTTTATAATTTTCTATGTAACGGTAACAACCTATTTACAAGTAGGTTGTT
ATTTTTTTACGATAGGGAAG

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega

Number of amino acids: Translated: 70; Mature: 70

Protein sequence:

>70_residues
MLNPSIDSLLTKIDSKYTLVTVAAKRAREMQLANNCVVEKPVSHKCVGKALEEIDMEALSYVPSEDKVTE

Sequences:

>Translated_70_residues
MLNPSIDSLLTKIDSKYTLVTVAAKRAREMQLANNCVVEKPVSHKCVGKALEEIDMEALSYVPSEDKVTE
>Mature_70_residues
MLNPSIDSLLTKIDSKYTLVTVAAKRAREMQLANNCVVEKPVSHKCVGKALEEIDMEALSYVPSEDKVTE

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RPOZ_BACAA (C3P641)

Other databases:

- EMBL:   CP001598
- RefSeq:   YP_002868107.1
- EnsemblBacteria:   EBBACT00000124781
- GeneID:   7852922
- GenomeReviews:   CP001598_GR
- KEGG:   bai:BAA_4032
- GeneTree:   EBGT00050000002319
- ProtClustDB:   PRK00392
- HAMAP:   MF_00366
- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293
- Gene3D:   G3DSA:3.90.940.10
- TIGRFAMs:   TIGR00690

Pfam domain/function: PF01192 RNA_pol_Rpb6; SSF63562 RNA_pol_omega

EC number: =2.7.7.6

Molecular weight: Translated: 7752; Mature: 7752

Theoretical pI: Translated: 5.03; Mature: 5.03

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
7.1 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
4.3 %Met     (Mature Protein)
7.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLNPSIDSLLTKIDSKYTLVTVAAKRAREMQLANNCVVEKPVSHKCVGKALEEIDMEALS
CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
YVPSEDKVTE
CCCCCCCCCC
>Mature Secondary Structure
MLNPSIDSLLTKIDSKYTLVTVAAKRAREMQLANNCVVEKPVSHKCVGKALEEIDMEALS
CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHH
YVPSEDKVTE
CCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA