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The map label for this gene is yrkF [H]

Identifier: 218901988

GI number: 218901988

Start: 833773

End: 834333

Strand: Direct

Name: yrkF [H]

Synonym: BCAH820_0870

Alternate gene names: 218901988

Gene position: 833773-834333 (Clockwise)

Preceding gene: 218901987

Following gene: 218901989

Centisome position: 15.72

GC content: 38.15

Gene sequence:

>561_bases
ATGAGTATAAAAGTGGATATGAGTTTAGATTGCAAAGGTTTGGCTTGTCCGATGCCGATTGTGAAAACGAAGAAGGCGAT
AGAAGGATTAGCATCAGGGCAAGTGATTGAAGTTAAGGCAACAGATAAAGGGTCTACTGTAGATATAAAAAGTTGGGCGA
ATAAAGTAGGGCATCAATATATCGGTACAAAACACGAGGGCGATATTTTGATGCATTACGTTAGAAAAGCACATGAGCAT
GAAGTGAATGAAGTTGTGAAATATCCTCATACAATTACGAATACAGAGTTGGAAGAGATATTAGTAAGTGGTGAAGAGTG
TACTGTATTAGATGTTCGTGAAGCAGCGGAATTCGCTTTTGGTCATATTCCATCTGCTACTTCGATGCCGTTAGGTGAAC
TAGAAAGTCTAGTCTTAGATAAGACGAAGCAAATTTATGTTGTTTGCCGAACTGGTAATCGCAGTGATGTAGCTTGCCAA
ATGTTGAAAGAGAAAGGTTATACAAATGTGAAAAATGTTATTCCCGGTATGATAGAGTGGCAAGGGAATATAGAGAATTA
A

Upstream 100 bases:

>100_bases
AAAAGCCGATAATCTGTCAAACGTAAGTGTTGACAGATTTTCAAAAACATTTTATTATACCCCTACAGGTATATGTATAT
AAGTTGTGGAGGAATCGACT

Downstream 100 bases:

>100_bases
ATTTTTTTAAATAAAAATATACCTCAGGGGGTAAGAAGATGGAAGTTAAATCATTACAAGCAAAAGATGTTGCAGAGAAA
GTTTTATTCGGAGAGTTGTT

Product: rhodanese domain protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 186; Mature: 185

Protein sequence:

>186_residues
MSIKVDMSLDCKGLACPMPIVKTKKAIEGLASGQVIEVKATDKGSTVDIKSWANKVGHQYIGTKHEGDILMHYVRKAHEH
EVNEVVKYPHTITNTELEEILVSGEECTVLDVREAAEFAFGHIPSATSMPLGELESLVLDKTKQIYVVCRTGNRSDVACQ
MLKEKGYTNVKNVIPGMIEWQGNIEN

Sequences:

>Translated_186_residues
MSIKVDMSLDCKGLACPMPIVKTKKAIEGLASGQVIEVKATDKGSTVDIKSWANKVGHQYIGTKHEGDILMHYVRKAHEH
EVNEVVKYPHTITNTELEEILVSGEECTVLDVREAAEFAFGHIPSATSMPLGELESLVLDKTKQIYVVCRTGNRSDVACQ
MLKEKGYTNVKNVIPGMIEWQGNIEN
>Mature_185_residues
SIKVDMSLDCKGLACPMPIVKTKKAIEGLASGQVIEVKATDKGSTVDIKSWANKVGHQYIGTKHEGDILMHYVRKAHEHE
VNEVVKYPHTITNTELEEILVSGEECTVLDVREAAEFAFGHIPSATSMPLGELESLVLDKTKQIYVVCRTGNRSDVACQM
LKEKGYTNVKNVIPGMIEWQGNIEN

Specific function: Unknown

COG id: COG0425

COG function: function code O; Predicted redox protein, regulator of disulfide bond formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 rhodanese domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001763
- InterPro:   IPR001455 [H]

Pfam domain/function: PF00581 Rhodanese; PF01206 SirA [H]

EC number: NA

Molecular weight: Translated: 20570; Mature: 20439

Theoretical pI: Translated: 6.15; Mature: 6.15

Prosite motif: PS50206 RHODANESE_3 ; PS01148 UPF0033

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
3.8 %Met     (Translated Protein)
6.5 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
3.2 %Met     (Mature Protein)
5.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIKVDMSLDCKGLACPMPIVKTKKAIEGLASGQVIEVKATDKGSTVDIKSWANKVGHQY
CEEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCEEEHHHHHHHHHHHH
IGTKHEGDILMHYVRKAHEHEVNEVVKYPHTITNTELEEILVSGEECTVLDVREAAEFAF
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCEEEEEHHHHHHHHH
GHIPSATSMPLGELESLVLDKTKQIYVVCRTGNRSDVACQMLKEKGYTNVKNVIPGMIEW
CCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCCHHHHCCCEEEE
QGNIEN
CCCCCC
>Mature Secondary Structure 
SIKVDMSLDCKGLACPMPIVKTKKAIEGLASGQVIEVKATDKGSTVDIKSWANKVGHQY
EEEEECCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCEEEHHHHHHHHHHHH
IGTKHEGDILMHYVRKAHEHEVNEVVKYPHTITNTELEEILVSGEECTVLDVREAAEFAF
CCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHCCCCEEEEEHHHHHHHHH
GHIPSATSMPLGELESLVLDKTKQIYVVCRTGNRSDVACQMLKEKGYTNVKNVIPGMIEW
CCCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHCCCCCHHHHCCCEEEE
QGNIEN
CCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]