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The map label for this gene is 218883717

Identifier: 218883717

GI number: 218883717

Start: 380502

End: 382919

Strand: Reverse

Name: 218883717

Synonym: DKAM_0406

Alternate gene names: NA

Gene position: 382919-380502 (Counterclockwise)

Preceding gene: 218883718

Following gene: 218883716

Centisome position: 28.05

GC content: 45.91

Gene sequence:

>2418_bases
TTGCCAAGGCTTGTCGGCCCCCTCATCCTGGTTGCTTCATTACTGGCTCCTCTGCTATCCCTGATAATAATAAATGCTCA
GAGCAGTAGCACTATACATGTGAACCCGGTCCCGGGGTTGTCGAGGGATTTCCTCAGGGGTCTAGACCTCTCAGAGGTTT
CATGGATCCTGGGGTTGGGTGGAAAATATTATTATGAGGATGGGAGAGAAGGCGATATACTTGACATAATTGCTGATAAC
GGCGTCAACGCTGTTAGACTGAGGGTTTGGAATAACCCATATGATGAAAATGGTGTTCCATATGGCGGTGGAAACTGTGA
CCTTGAAAGGATGACACAGTTCGCCTCTAAAGTAAAAAGCAGGGGGTTTAAGCTCCTCATTGATTTCCACTATAGCGACT
GGTGGGCGGATCCCTCAAAGCAATATAAGCCAAAGGCATGGGCTAACCTTTCATTCAATGAACTAGTGAGTACAGTTTAT
AATTGGACTAGGGACGCACTATTATACATGAAGAACAATAATGCATTACCAGACATGGTTCAAGTTGGCAACGAGATAAA
CAATGGTTTCCTATGGCCCGATGGGCGCGTCGAGAACTGGACTCAATTCGTGACCCTGTTAAAGTCTGCTATAAAAGCTA
TCCGCGACATAGATCCCTCAATCAAGGTCGTTATACATCTATCTGGTAACAGAGAGTTAGACTACTATGTCAACTTCTTC
GAGAGGCTTGCCAATGATGGGGTAGACTATGATGTCATAGCGTTATCGTACTATACATACTGGCATGGTAGCCTTGAAAA
ACTGAAGCAGATGGCCTCAACCCTAACCTCCAGGTTTAACAAGGAGATCATACTAGCCGAGATAGCATATCCATGGACGC
TGGAAGATGCCGATGGATACCCGAATTTATTTAGCAGTAGGGATCAGGAGATTAAAGGCGGGTACAGGGCCAGCGTACAA
GGTCAGGCAAGCCTCATTAGAGACATAATCGAGGTCCTGTATGAATCAGCTGGGGATAAGGCCTTAGGTGTATTCTACTG
GGGTGCAGCCTGGATCCCTGTGCCGGGTGCAGGCTGGAAGACTGGTGAGGGCAATCCATGGGAAAATCAAGCTTTATTTG
ACTTTAATGGGAAGGCCCTACCATCGCTGAGAGTGTTCAGAATGATCTACGAGGCCGAGTACATCGAGGTGAAGCCTGTA
GGGCTATATAATCCCGGACCATTAAATGTAACAGCCTATGCTGGTTCAAAACCTGTTCTACTGGAGAACACTCTGGTAGT
CTACTCGGATGACTCAATTAGAAACGCTGCAATCAAATGGGGTGAAATACCGGTATATGAGTCACCTGGCACATACTACC
TTAATGGATACGTGGAAAACACCAGTATAATGGTTGTAGCCAGGATCACAGTCTTGGAGAGGTTGTACATAGATGTGGGA
GACCCCGAGGGAGACGATAAGGGGCCGGGAACATATGGCTATCCAACAGCATCCGTGTACGCTCCAGGAGTATTCGATAT
TGTGAGAGCTAGTTTAGAGGTGGAGAGCGAGGACTTAGTTGTAAGAGTCTACTTTAAGAACCTAGGTGGGAACCCCTGGA
ATGGGCCCAATGGCTTTAGCCTACAGTATATTCAAGTATATATACGTACAACAAATCCGCTAGCGACTAACAAGGTGTAT
AGGAGGGATACTTTTGGACTTAATATAGAGCTCAGAGATGATTATGCATGGCAATACGCGTTACTTATATCACCTGGATG
GGGTTCGGGGCCTCTTCCAGATGGCGAGTTATCCTCGTTACACTATGCCAATGGAACAGTCCTCGTGGAGGGCAAGGACT
TCAAGGTATCATCAAACACGAGTGATAACTATGTAGAGGTAAGGACACCGTTGAATCTGCTCTCGGACTGGGAAAACTTG
AAGTCTTGGAAGATAATTGTAGCTGTTGCAAGCTGGGCTGGTGAAAACCCTGATCGTATAAGGTCATTTGCACCGGGAGG
TGGAGAATGGCTTTCAGACCCCGTGGCCTACGCTAATGAATCATCTAAGCCACTTATACAGTCAGCATTACTCGTGAATG
TATTGCCGAAGATGTATGATTTATTAATTTACTCCCAGGAATATCCACATGGATTAACCGCGGATCAACAGTATACATGG
TTAATGGGTTTCAACCCCTCTAAATCCACCTTAGCGATTATTCCACCCGAGGTAAAACAAATAGAAACTGTGACACAGAC
TATAACTACGACCATTACAACCACACTGCTGTCGACCACAGAGAAAACCGTGAGTATATATGAGACGCAAACAGGGTATC
CCGGTTACACGGTAAACACTGTGATCGGTGTAGCATTACTGTCACTAGCACTGGGTATTGGAGTAGGGTATTTCTTGTTA
AGACTACAGAGGGAGTGA

Upstream 100 bases:

>100_bases
AATACATAGGTAAATGATTAGTACAGTGCTCAAATACCTTTTAAAATTATATAAACAGGCAAACTATTATACCTTGTAAA
GGTGACTATTATTGAATCGG

Downstream 100 bases:

>100_bases
TTTTACATAAGTATTTCAACATTCTTTATTTAGCATTCTAAATGCAACCCATAGATTTTTACAAAGATTAAATATATAAC
CTTGGTTTACTTATAGGCAT

Product: arabinogalactan endo-1,4-beta-galactosidase

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 805; Mature: 804

Protein sequence:

>805_residues
MPRLVGPLILVASLLAPLLSLIIINAQSSSTIHVNPVPGLSRDFLRGLDLSEVSWILGLGGKYYYEDGREGDILDIIADN
GVNAVRLRVWNNPYDENGVPYGGGNCDLERMTQFASKVKSRGFKLLIDFHYSDWWADPSKQYKPKAWANLSFNELVSTVY
NWTRDALLYMKNNNALPDMVQVGNEINNGFLWPDGRVENWTQFVTLLKSAIKAIRDIDPSIKVVIHLSGNRELDYYVNFF
ERLANDGVDYDVIALSYYTYWHGSLEKLKQMASTLTSRFNKEIILAEIAYPWTLEDADGYPNLFSSRDQEIKGGYRASVQ
GQASLIRDIIEVLYESAGDKALGVFYWGAAWIPVPGAGWKTGEGNPWENQALFDFNGKALPSLRVFRMIYEAEYIEVKPV
GLYNPGPLNVTAYAGSKPVLLENTLVVYSDDSIRNAAIKWGEIPVYESPGTYYLNGYVENTSIMVVARITVLERLYIDVG
DPEGDDKGPGTYGYPTASVYAPGVFDIVRASLEVESEDLVVRVYFKNLGGNPWNGPNGFSLQYIQVYIRTTNPLATNKVY
RRDTFGLNIELRDDYAWQYALLISPGWGSGPLPDGELSSLHYANGTVLVEGKDFKVSSNTSDNYVEVRTPLNLLSDWENL
KSWKIIVAVASWAGENPDRIRSFAPGGGEWLSDPVAYANESSKPLIQSALLVNVLPKMYDLLIYSQEYPHGLTADQQYTW
LMGFNPSKSTLAIIPPEVKQIETVTQTITTTITTTLLSTTEKTVSIYETQTGYPGYTVNTVIGVALLSLALGIGVGYFLL
RLQRE

Sequences:

>Translated_805_residues
MPRLVGPLILVASLLAPLLSLIIINAQSSSTIHVNPVPGLSRDFLRGLDLSEVSWILGLGGKYYYEDGREGDILDIIADN
GVNAVRLRVWNNPYDENGVPYGGGNCDLERMTQFASKVKSRGFKLLIDFHYSDWWADPSKQYKPKAWANLSFNELVSTVY
NWTRDALLYMKNNNALPDMVQVGNEINNGFLWPDGRVENWTQFVTLLKSAIKAIRDIDPSIKVVIHLSGNRELDYYVNFF
ERLANDGVDYDVIALSYYTYWHGSLEKLKQMASTLTSRFNKEIILAEIAYPWTLEDADGYPNLFSSRDQEIKGGYRASVQ
GQASLIRDIIEVLYESAGDKALGVFYWGAAWIPVPGAGWKTGEGNPWENQALFDFNGKALPSLRVFRMIYEAEYIEVKPV
GLYNPGPLNVTAYAGSKPVLLENTLVVYSDDSIRNAAIKWGEIPVYESPGTYYLNGYVENTSIMVVARITVLERLYIDVG
DPEGDDKGPGTYGYPTASVYAPGVFDIVRASLEVESEDLVVRVYFKNLGGNPWNGPNGFSLQYIQVYIRTTNPLATNKVY
RRDTFGLNIELRDDYAWQYALLISPGWGSGPLPDGELSSLHYANGTVLVEGKDFKVSSNTSDNYVEVRTPLNLLSDWENL
KSWKIIVAVASWAGENPDRIRSFAPGGGEWLSDPVAYANESSKPLIQSALLVNVLPKMYDLLIYSQEYPHGLTADQQYTW
LMGFNPSKSTLAIIPPEVKQIETVTQTITTTITTTLLSTTEKTVSIYETQTGYPGYTVNTVIGVALLSLALGIGVGYFLL
RLQRE
>Mature_804_residues
PRLVGPLILVASLLAPLLSLIIINAQSSSTIHVNPVPGLSRDFLRGLDLSEVSWILGLGGKYYYEDGREGDILDIIADNG
VNAVRLRVWNNPYDENGVPYGGGNCDLERMTQFASKVKSRGFKLLIDFHYSDWWADPSKQYKPKAWANLSFNELVSTVYN
WTRDALLYMKNNNALPDMVQVGNEINNGFLWPDGRVENWTQFVTLLKSAIKAIRDIDPSIKVVIHLSGNRELDYYVNFFE
RLANDGVDYDVIALSYYTYWHGSLEKLKQMASTLTSRFNKEIILAEIAYPWTLEDADGYPNLFSSRDQEIKGGYRASVQG
QASLIRDIIEVLYESAGDKALGVFYWGAAWIPVPGAGWKTGEGNPWENQALFDFNGKALPSLRVFRMIYEAEYIEVKPVG
LYNPGPLNVTAYAGSKPVLLENTLVVYSDDSIRNAAIKWGEIPVYESPGTYYLNGYVENTSIMVVARITVLERLYIDVGD
PEGDDKGPGTYGYPTASVYAPGVFDIVRASLEVESEDLVVRVYFKNLGGNPWNGPNGFSLQYIQVYIRTTNPLATNKVYR
RDTFGLNIELRDDYAWQYALLISPGWGSGPLPDGELSSLHYANGTVLVEGKDFKVSSNTSDNYVEVRTPLNLLSDWENLK
SWKIIVAVASWAGENPDRIRSFAPGGGEWLSDPVAYANESSKPLIQSALLVNVLPKMYDLLIYSQEYPHGLTADQQYTWL
MGFNPSKSTLAIIPPEVKQIETVTQTITTTITTTLLSTTEKTVSIYETQTGYPGYTVNTVIGVALLSLALGIGVGYFLLR
LQRE

Specific function: Unknown

COG id: COG3867

COG function: function code G; Arabinogalactan endo-1,4-beta-galactosidase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyl hydrolase 53 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011683
- InterPro:   IPR017853
- InterPro:   IPR013781 [H]

Pfam domain/function: PF07745 Glyco_hydro_53 [H]

EC number: NA

Molecular weight: Translated: 89869; Mature: 89737

Theoretical pI: Translated: 4.61; Mature: 4.61

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.1 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.1 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPRLVGPLILVASLLAPLLSLIIINAQSSSTIHVNPVPGLSRDFLRGLDLSEVSWILGLG
CCCHHHHHHHHHHHHHHHHHHEEEECCCCCEEEECCCCCCCHHHHCCCCHHHHHHHHHCC
GKYYYEDGREGDILDIIADNGVNAVRLRVWNNPYDENGVPYGGGNCDLERMTQFASKVKS
CEEEECCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
RGFKLLIDFHYSDWWADPSKQYKPKAWANLSFNELVSTVYNWTRDALLYMKNNNALPDMV
CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHH
QVGNEINNGFLWPDGRVENWTQFVTLLKSAIKAIRDIDPSIKVVIHLSGNRELDYYVNFF
HHCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH
ERLANDGVDYDVIALSYYTYWHGSLEKLKQMASTLTSRFNKEIILAEIAYPWTLEDADGY
HHHHCCCCCEEEEEEEEEEHCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCEEECCCCCC
PNLFSSRDQEIKGGYRASVQGQASLIRDIIEVLYESAGDKALGVFYWGAAWIPVPGAGWK
CCHHCCCCHHHCCCEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEEECEEEEECCCCCCC
TGEGNPWENQALFDFNGKALPSLRVFRMIYEAEYIEVKPVGLYNPGPLNVTAYAGSKPVL
CCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCEEEEECCCCCEE
LENTLVVYSDDSIRNAAIKWGEIPVYESPGTYYLNGYVENTSIMVVARITVLERLYIDVG
EECEEEEECCCCCCHHEEEECCCEEEECCCCEEEEEEEECCEEEEEEHHHHHHHHEEECC
DPEGDDKGPGTYGYPTASVYAPGVFDIVRASLEVESEDLVVRVYFKNLGGNPWNGPNGFS
CCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHEECCCCEEEEEEEECCCCCCCCCCCCCE
LQYIQVYIRTTNPLATNKVYRRDTFGLNIELRDDYAWQYALLISPGWGSGPLPDGELSSL
EEEEEEEEEECCCCCCCCEEECCCEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCEE
HYANGTVLVEGKDFKVSSNTSDNYVEVRTPLNLLSDWENLKSWKIIVAVASWAGENPDRI
EEECCEEEEECCCEEEECCCCCCEEEEECCHHHHHHHHCCCCEEEEEEEECCCCCCHHHH
RSFAPGGGEWLSDPVAYANESSKPLIQSALLVNVLPKMYDLLIYSQEYPHGLTADQQYTW
HHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCEEE
LMGFNPSKSTLAIIPPEVKQIETVTQTITTTITTTLLSTTEKTVSIYETQTGYPGYTVNT
EEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHH
VIGVALLSLALGIGVGYFLLRLQRE
HHHHHHHHHHHHHHHHHHHEEEECC
>Mature Secondary Structure 
PRLVGPLILVASLLAPLLSLIIINAQSSSTIHVNPVPGLSRDFLRGLDLSEVSWILGLG
CCHHHHHHHHHHHHHHHHHHEEEECCCCCEEEECCCCCCCHHHHCCCCHHHHHHHHHCC
GKYYYEDGREGDILDIIADNGVNAVRLRVWNNPYDENGVPYGGGNCDLERMTQFASKVKS
CEEEECCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHC
RGFKLLIDFHYSDWWADPSKQYKPKAWANLSFNELVSTVYNWTRDALLYMKNNNALPDMV
CCEEEEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCHHHH
QVGNEINNGFLWPDGRVENWTQFVTLLKSAIKAIRDIDPSIKVVIHLSGNRELDYYVNFF
HHCCCCCCCEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHH
ERLANDGVDYDVIALSYYTYWHGSLEKLKQMASTLTSRFNKEIILAEIAYPWTLEDADGY
HHHHCCCCCEEEEEEEEEEHCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCEEECCCCCC
PNLFSSRDQEIKGGYRASVQGQASLIRDIIEVLYESAGDKALGVFYWGAAWIPVPGAGWK
CCHHCCCCHHHCCCEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEEECEEEEECCCCCCC
TGEGNPWENQALFDFNGKALPSLRVFRMIYEAEYIEVKPVGLYNPGPLNVTAYAGSKPVL
CCCCCCCCCCEEEECCCCCCCHHHHHHHHHHCCEEEEEEECCCCCCCCEEEEECCCCCEE
LENTLVVYSDDSIRNAAIKWGEIPVYESPGTYYLNGYVENTSIMVVARITVLERLYIDVG
EECEEEEECCCCCCHHEEEECCCEEEECCCCEEEEEEEECCEEEEEEHHHHHHHHEEECC
DPEGDDKGPGTYGYPTASVYAPGVFDIVRASLEVESEDLVVRVYFKNLGGNPWNGPNGFS
CCCCCCCCCCCCCCCCCCEECCCHHHHHHHHHEECCCCEEEEEEEECCCCCCCCCCCCCE
LQYIQVYIRTTNPLATNKVYRRDTFGLNIELRDDYAWQYALLISPGWGSGPLPDGELSSL
EEEEEEEEEECCCCCCCCEEECCCEEEEEEEECCCCEEEEEEEECCCCCCCCCCCCCCEE
HYANGTVLVEGKDFKVSSNTSDNYVEVRTPLNLLSDWENLKSWKIIVAVASWAGENPDRI
EEECCEEEEECCCEEEECCCCCCEEEEECCHHHHHHHHCCCCEEEEEEEECCCCCCHHHH
RSFAPGGGEWLSDPVAYANESSKPLIQSALLVNVLPKMYDLLIYSQEYPHGLTADQQYTW
HHCCCCCCCCCCCCHHHCCCCCCHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCCCCEEE
LMGFNPSKSTLAIIPPEVKQIETVTQTITTTITTTLLSTTEKTVSIYETQTGYPGYTVNT
EEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCHHHH
VIGVALLSLALGIGVGYFLLRLQRE
HHHHHHHHHHHHHHHHHHHEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA