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The map label for this gene is ndhA [H]

Identifier: 218883718

GI number: 218883718

Start: 383212

End: 384207

Strand: Reverse

Name: ndhA [H]

Synonym: DKAM_0407

Alternate gene names: 218883718

Gene position: 384207-383212 (Counterclockwise)

Preceding gene: 218883719

Following gene: 218883717

Centisome position: 28.14

GC content: 45.08

Gene sequence:

>996_bases
ATGGATGTGAGCCAGGTAGCCTTATTCCTGTTCTCAACACTGGTATTCCCCGGGTTCCTTTTCATATTCATACTATCCCT
GTTCACACAGTACCTAGTTAGAAAGATAAGTGCCAGGTATCAGAAGAGAATGGGTCCCTCATACGTAGGACCCTATGGCG
TGCTCCAGCCATTCATGGATTTCTGGAAGCTTCTAAGAGTTAAGGAGGTGGTTAGATCCAGGTATAGCATGCAGAGAGTG
GCCGAGCTAACCCTATTAATCGGCATAGCCTGTATTACCGGTGCAATAGTGTTGCTACCAATCGGAGTCCTCAATATTCG
GGGTCCACTGGATTACCTGGTATTCTTCTACATGGCCAGTGCCATGCCGATTCTAATGATAGTGCTTGCATCGCTCTCGA
TGCCTGGACCATATACAAGCCTAGGAGTGTCCAGGTTGCTCAGTATTCTAACGATCAGCGAACCAGTATATTTCACCGGG
TTATTCATACCTTGCTTCCTAGCTACATATAGGGATCCGTTGGTCCTCTCCGTTAGCATGACTTCACATAGGGTCATGGA
TTTATGGCTTAACCCTGTTACGGCATTGATATTATTGCTCTCACTGATAGCTCTAGTGATCTCACTACAGTCTAAAGCCA
TGTATCCGCCATTCAATATTCCTGAGGCCGAGCAGGAGATAATAGCTGGTTTTGAAACAGAGTTCTCGGGACCCCTATTA
GCGCTGGCTTCACTACTACACGACATGGATCTAACGGTGTCGATCCTTACAGTAGTATACATAGTACTCGGAGGTCCAGC
GCCATTCCAGCATTTAACACTTGGTGGTATACTAATGGTGATACTAAAATACCTGGTGCTAGTATTAGTAGTGGCCACAA
TTAAGAATATCTTCGGAAGATACAGGCTAGAACAGGCACTTATGCAATTATTAAAGTACGGAGGTATACCCGTGTTAATC
TCAGTAATATTATCACTCGCATGGGTATACCTCTAG

Upstream 100 bases:

>100_bases
GGGAGCCTCCACGACTGGTTCAACTTCATAGCTTCATGGCTGGGGCTCCTCGTGTTAATCGCGATACTTGTTTTAATATT
AATGCTTACAGGGTGGTAGC

Downstream 100 bases:

>100_bases
CTCTCTTCAATATAATATTTTCTATTAGGTAAACGTAATTACTGGGAGCAAATACTCGCCCGCAGATTCACGGATCGAAC
CCTATTGTTCTATTTAGACT

Product: respiratory-chain NADH dehydrogenase subunit 1

Products: NA

Alternate protein names: NAD(P)H dehydrogenase I subunit 1; NDH-1 subunit 1; NDH-A [H]

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MDVSQVALFLFSTLVFPGFLFIFILSLFTQYLVRKISARYQKRMGPSYVGPYGVLQPFMDFWKLLRVKEVVRSRYSMQRV
AELTLLIGIACITGAIVLLPIGVLNIRGPLDYLVFFYMASAMPILMIVLASLSMPGPYTSLGVSRLLSILTISEPVYFTG
LFIPCFLATYRDPLVLSVSMTSHRVMDLWLNPVTALILLLSLIALVISLQSKAMYPPFNIPEAEQEIIAGFETEFSGPLL
ALASLLHDMDLTVSILTVVYIVLGGPAPFQHLTLGGILMVILKYLVLVLVVATIKNIFGRYRLEQALMQLLKYGGIPVLI
SVILSLAWVYL

Sequences:

>Translated_331_residues
MDVSQVALFLFSTLVFPGFLFIFILSLFTQYLVRKISARYQKRMGPSYVGPYGVLQPFMDFWKLLRVKEVVRSRYSMQRV
AELTLLIGIACITGAIVLLPIGVLNIRGPLDYLVFFYMASAMPILMIVLASLSMPGPYTSLGVSRLLSILTISEPVYFTG
LFIPCFLATYRDPLVLSVSMTSHRVMDLWLNPVTALILLLSLIALVISLQSKAMYPPFNIPEAEQEIIAGFETEFSGPLL
ALASLLHDMDLTVSILTVVYIVLGGPAPFQHLTLGGILMVILKYLVLVLVVATIKNIFGRYRLEQALMQLLKYGGIPVLI
SVILSLAWVYL
>Mature_331_residues
MDVSQVALFLFSTLVFPGFLFIFILSLFTQYLVRKISARYQKRMGPSYVGPYGVLQPFMDFWKLLRVKEVVRSRYSMQRV
AELTLLIGIACITGAIVLLPIGVLNIRGPLDYLVFFYMASAMPILMIVLASLSMPGPYTSLGVSRLLSILTISEPVYFTG
LFIPCFLATYRDPLVLSVSMTSHRVMDLWLNPVTALILLLSLIALVISLQSKAMYPPFNIPEAEQEIIAGFETEFSGPLL
ALASLLHDMDLTVSILTVVYIVLGGPAPFQHLTLGGILMVILKYLVLVLVVATIKNIFGRYRLEQALMQLLKYGGIPVLI
SVILSLAWVYL

Specific function: NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone

COG id: COG1005

COG function: function code C; NADH:ubiquinone oxidoreductase subunit 1 (chain H)

Gene ontology:

Cell location: Cellular thylakoid membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the complex I subunit 1 family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR023020
- InterPro:   IPR001694
- InterPro:   IPR018086 [H]

Pfam domain/function: PF00146 NADHdh [H]

EC number: NA

Molecular weight: Translated: 36854; Mature: 36854

Theoretical pI: Translated: 9.30; Mature: 9.30

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
4.2 %Met     (Mature Protein)
4.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDVSQVALFLFSTLVFPGFLFIFILSLFTQYLVRKISARYQKRMGPSYVGPYGVLQPFMD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
FWKLLRVKEVVRSRYSMQRVAELTLLIGIACITGAIVLLPIGVLNIRGPLDYLVFFYMAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
AMPILMIVLASLSMPGPYTSLGVSRLLSILTISEPVYFTGLFIPCFLATYRDPLVLSVSM
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEEH
TSHRVMDLWLNPVTALILLLSLIALVISLQSKAMYPPFNIPEAEQEIIAGFETEFSGPLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHH
ALASLLHDMDLTVSILTVVYIVLGGPAPFQHLTLGGILMVILKYLVLVLVVATIKNIFGR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YRLEQALMQLLKYGGIPVLISVILSLAWVYL
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC
>Mature Secondary Structure
MDVSQVALFLFSTLVFPGFLFIFILSLFTQYLVRKISARYQKRMGPSYVGPYGVLQPFMD
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
FWKLLRVKEVVRSRYSMQRVAELTLLIGIACITGAIVLLPIGVLNIRGPLDYLVFFYMAS
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
AMPILMIVLASLSMPGPYTSLGVSRLLSILTISEPVYFTGLFIPCFLATYRDPLVLSVSM
HHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEEH
TSHRVMDLWLNPVTALILLLSLIALVISLQSKAMYPPFNIPEAEQEIIAGFETEFSGPLL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHH
ALASLLHDMDLTVSILTVVYIVLGGPAPFQHLTLGGILMVILKYLVLVLVVATIKNIFGR
HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
YRLEQALMQLLKYGGIPVLISVILSLAWVYL
HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA