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The map label for this gene is deoC [H]

Identifier: 218883613

GI number: 218883613

Start: 281754

End: 282491

Strand: Direct

Name: deoC [H]

Synonym: DKAM_0302

Alternate gene names: 218883613

Gene position: 281754-282491 (Clockwise)

Preceding gene: 218883612

Following gene: 218883614

Centisome position: 20.64

GC content: 46.61

Gene sequence:

>738_bases
TTGATAACCCCGAGAAATAAAGAGGTGTTGTACTTGTTTACACAATTTGTTGAGAAGCTGAGTGTGAGAGAGCTGGCAGG
CATGATTGATCATACTTTACTGAAGCCCGAGGCTGATTTAAAGCTACTTGATAAATACATCGAGGACACTAGGAGATACG
GGTTTAAACTACTCATGATCCCCCTCTCACTCGTTGAGTACGTGAGGGAGGTAGCTGGTAGAACAATAGATGTTGGCGTG
GTAGTAGGCTTCCCACTCGGTAACACATCTACAAGAGTTAAAATAGCTGAGGCCGTTGAAGCTGTTGAGCAAGGTGCCAG
CGAGATAGACATGGTTATGAATATAAACTTGTTCAAGTCGAGGAACTATGAGTACGTTAAGAGGGATATAAGAGGAATTG
TTGAGGCAGCTAGGTCCAAGGGGGCTAGAGCCGTTAAGGTGATCATTGAGACCGGGTTGCTCAGTGACGAGGAGAAGAGG
AAGGCGACGGAGCTAGTCGTGGAAGCAGGGGCGGACTTCGTGAAAACATGTACGGGGTTCCTTGGATCAGTTGCAACAGT
ACATGACGTAGATATATTGTATAAGGCGGCATCCGGTAAGATAGGTGTGAAAGCGTCTGGTGGTATAAGACGCGGGCTGG
ATGCCCTAGCATTAATAGCTGCAGGCGCATCTAGGATAGGTACTAGTTCAGGGGATAAGATAATCGAGGACTTTATAAGG
ATTAAGGAGGGGAAGTAG

Upstream 100 bases:

>100_bases
AACCCGAAGGAGTATGAGGAGCTATATACTCCTGAGAAATACTCTGAGAAAATAAGGAGCGGGAAACAACACTAGTTTTT
TTAACTCGTTTCTGATTCAC

Downstream 100 bases:

>100_bases
GGTGTCCGGTGAGGAGGGATTATGCTTATTTGAACCAGCCGGTAGATCATTCAAGCTATTATTAAGGGTCCTCAAGGTAT
ACGCTGTTGAGAAATCGCCA

Product: deoxyribose-phosphate aldolase

Products: NA

Alternate protein names: Phosphodeoxyriboaldolase; DERA; Deoxyriboaldolase [H]

Number of amino acids: Translated: 245; Mature: 245

Protein sequence:

>245_residues
MITPRNKEVLYLFTQFVEKLSVRELAGMIDHTLLKPEADLKLLDKYIEDTRRYGFKLLMIPLSLVEYVREVAGRTIDVGV
VVGFPLGNTSTRVKIAEAVEAVEQGASEIDMVMNINLFKSRNYEYVKRDIRGIVEAARSKGARAVKVIIETGLLSDEEKR
KATELVVEAGADFVKTCTGFLGSVATVHDVDILYKAASGKIGVKASGGIRRGLDALALIAAGASRIGTSSGDKIIEDFIR
IKEGK

Sequences:

>Translated_245_residues
MITPRNKEVLYLFTQFVEKLSVRELAGMIDHTLLKPEADLKLLDKYIEDTRRYGFKLLMIPLSLVEYVREVAGRTIDVGV
VVGFPLGNTSTRVKIAEAVEAVEQGASEIDMVMNINLFKSRNYEYVKRDIRGIVEAARSKGARAVKVIIETGLLSDEEKR
KATELVVEAGADFVKTCTGFLGSVATVHDVDILYKAASGKIGVKASGGIRRGLDALALIAAGASRIGTSSGDKIIEDFIR
IKEGK
>Mature_245_residues
MITPRNKEVLYLFTQFVEKLSVRELAGMIDHTLLKPEADLKLLDKYIEDTRRYGFKLLMIPLSLVEYVREVAGRTIDVGV
VVGFPLGNTSTRVKIAEAVEAVEQGASEIDMVMNINLFKSRNYEYVKRDIRGIVEAARSKGARAVKVIIETGLLSDEEKR
KATELVVEAGADFVKTCTGFLGSVATVHDVDILYKAASGKIGVKASGGIRRGLDALALIAAGASRIGTSSGDKIIEDFIR
IKEGK

Specific function: Nucleotide and deoxyribonucleotide catabolism. [C]

COG id: COG0274

COG function: function code F; Deoxyribose-phosphate aldolase

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the deoC/fbaB aldolase family. DeoC type 1 subfamily [H]

Homologues:

Organism=Homo sapiens, GI116063554, Length=160, Percent_Identity=33.75, Blast_Score=75, Evalue=6e-14,
Organism=Escherichia coli, GI1790841, Length=180, Percent_Identity=32.2222222222222, Blast_Score=72, Evalue=4e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR011343
- InterPro:   IPR002915
- InterPro:   IPR022979 [H]

Pfam domain/function: PF01791 DeoC [H]

EC number: =4.1.2.4 [H]

Molecular weight: Translated: 26793; Mature: 26793

Theoretical pI: Translated: 9.23; Mature: 9.23

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MITPRNKEVLYLFTQFVEKLSVRELAGMIDHTLLKPEADLKLLDKYIEDTRRYGFKLLMI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHH
PLSLVEYVREVAGRTIDVGVVVGFPLGNTSTRVKIAEAVEAVEQGASEIDMVMNINLFKS
HHHHHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCHHHHHHHHEEEHHHC
RNYEYVKRDIRGIVEAARSKGARAVKVIIETGLLSDEEKRKATELVVEAGADFVKTCTGF
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHH
LGSVATVHDVDILYKAASGKIGVKASGGIRRGLDALALIAAGASRIGTSSGDKIIEDFIR
HHCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCHHHCCCCCCHHHHHHHHH
IKEGK
HCCCC
>Mature Secondary Structure
MITPRNKEVLYLFTQFVEKLSVRELAGMIDHTLLKPEADLKLLDKYIEDTRRYGFKLLMI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCHHHHHH
PLSLVEYVREVAGRTIDVGVVVGFPLGNTSTRVKIAEAVEAVEQGASEIDMVMNINLFKS
HHHHHHHHHHHCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHHHCHHHHHHHHEEEHHHC
RNYEYVKRDIRGIVEAARSKGARAVKVIIETGLLSDEEKRKATELVVEAGADFVKTCTGF
CCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHHHHHH
LGSVATVHDVDILYKAASGKIGVKASGGIRRGLDALALIAAGASRIGTSSGDKIIEDFIR
HHCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCHHHCCCCCCHHHHHHHHH
IKEGK
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11997336 [H]