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The map label for this gene is rbcR [H]

Identifier: 218709125

GI number: 218709125

Start: 1198527

End: 1199453

Strand: Direct

Name: rbcR [H]

Synonym: VS_1132

Alternate gene names: 218709125

Gene position: 1198527-1199453 (Clockwise)

Preceding gene: 218709124

Following gene: 218709126

Centisome position: 36.33

GC content: 46.28

Gene sequence:

>927_bases
ATGCATCACTTTAATATCCGCGCTCTTGAGTATTTAAACGCGTTGTCTAAGTATGGCTCATTGCGTAAGGCATCCAAGAT
GATGAATGTTGACCCTGCTGCAATGAGCAGAATGCTGACCCAGCTCGAAGCGCAAGCGGAAATGAAAGTATGGGAGCGCA
ACAACCGCCAATCACTGTTGACTGAGGCGGGTAATGAACTGTTGCATTACTATCGTTCCATTGTTCGTGGAGAGGCTGCA
GTGCTTACTCGACTAGCCAAGCTTAAAAACCTCAAAGGAGGCAGTGTCAGTATTGCCATCGGTGAAGGGTTTATTACCAA
CTTGGTGTCAAAGCCGATGCAAACCTTTATGACCCGTTATCCTGATATCAACCTTTCTATTGAAATTGCTGGGGCATTGG
ACGCGGTCAAGATGTTGGAAGATCAACAGATAGACTTCGCAATAACCTATGCTTCTGCTCCACATCCTAAACTGCATTCC
CACGTTGAACGTAGCCATCCGCTCGAATTGATTGCTCCGAAGGGGCACTTCCTTACGATGAAAGAAGCACCTGTGACACT
GCAAGATATTAAGGATGTGTCTTTGGCGTTGATCGACAACTCAACAGGGATGGGTCGATTGGTTAAGCAGGCCGAGCAAA
TGTCGCATTTCACGTTAGAACCTAAGCTTCAGACGAACTCAGTCACTGCACTGACTAACTTTGTTTCAGCAGGGTTGGGT
GTCACCTTTATGCCTAAGCTCACGGTGATCGATGAAATAAAGTCAGGACAGATTGAAGTGGTTGCGACCGAGTTGGAGAT
GCTATCGAAGGCGACGGTTAAGGTTCAATCTTTAAAAGACCGCGCACTCACGCTACAGGCCGAAACCTTGTTAGATTTCT
TACTTGAAAACGCCACTTTCTTGAGTCATGACGCTTACAATATCTAA

Upstream 100 bases:

>100_bases
GTTAGTAAGTGTAAATACGTTCTTGATAAAATGGGATACATGTTCGCAGCCAATTTGTGAGACGCTTGATCTAGTGTCAG
TCGAATCACAAGGAAGTTGA

Downstream 100 bases:

>100_bases
GAATAGTAGATTTACTTAGCGACTCCTCCTAAGCGACCAAATACCGCCAATATCACAGTTCCAAACTGCCGAATTCGTTT
TTAAGTTGAATTGAGTTTTT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 308; Mature: 308

Protein sequence:

>308_residues
MHHFNIRALEYLNALSKYGSLRKASKMMNVDPAAMSRMLTQLEAQAEMKVWERNNRQSLLTEAGNELLHYYRSIVRGEAA
VLTRLAKLKNLKGGSVSIAIGEGFITNLVSKPMQTFMTRYPDINLSIEIAGALDAVKMLEDQQIDFAITYASAPHPKLHS
HVERSHPLELIAPKGHFLTMKEAPVTLQDIKDVSLALIDNSTGMGRLVKQAEQMSHFTLEPKLQTNSVTALTNFVSAGLG
VTFMPKLTVIDEIKSGQIEVVATELEMLSKATVKVQSLKDRALTLQAETLLDFLLENATFLSHDAYNI

Sequences:

>Translated_308_residues
MHHFNIRALEYLNALSKYGSLRKASKMMNVDPAAMSRMLTQLEAQAEMKVWERNNRQSLLTEAGNELLHYYRSIVRGEAA
VLTRLAKLKNLKGGSVSIAIGEGFITNLVSKPMQTFMTRYPDINLSIEIAGALDAVKMLEDQQIDFAITYASAPHPKLHS
HVERSHPLELIAPKGHFLTMKEAPVTLQDIKDVSLALIDNSTGMGRLVKQAEQMSHFTLEPKLQTNSVTALTNFVSAGLG
VTFMPKLTVIDEIKSGQIEVVATELEMLSKATVKVQSLKDRALTLQAETLLDFLLENATFLSHDAYNI
>Mature_308_residues
MHHFNIRALEYLNALSKYGSLRKASKMMNVDPAAMSRMLTQLEAQAEMKVWERNNRQSLLTEAGNELLHYYRSIVRGEAA
VLTRLAKLKNLKGGSVSIAIGEGFITNLVSKPMQTFMTRYPDINLSIEIAGALDAVKMLEDQQIDFAITYASAPHPKLHS
HVERSHPLELIAPKGHFLTMKEAPVTLQDIKDVSLALIDNSTGMGRLVKQAEQMSHFTLEPKLQTNSVTALTNFVSAGLG
VTFMPKLTVIDEIKSGQIEVVATELEMLSKATVKVQSLKDRALTLQAETLLDFLLENATFLSHDAYNI

Specific function: Trans-acting transcriptional regulator of RuBisCO genes (rbcL and rbcS) expression [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH lysR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI157672245, Length=245, Percent_Identity=24.4897959183673, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1789204, Length=266, Percent_Identity=24.812030075188, Blast_Score=69, Evalue=3e-13,
Organism=Escherichia coli, GI1788748, Length=299, Percent_Identity=20.066889632107, Blast_Score=66, Evalue=3e-12,
Organism=Escherichia coli, GI145693105, Length=281, Percent_Identity=21.3523131672598, Blast_Score=65, Evalue=4e-12,
Organism=Escherichia coli, GI1787879, Length=244, Percent_Identity=25.8196721311475, Blast_Score=65, Evalue=5e-12,
Organism=Escherichia coli, GI1789639, Length=294, Percent_Identity=21.7687074829932, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1788297, Length=248, Percent_Identity=22.9838709677419, Blast_Score=62, Evalue=4e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000847
- InterPro:   IPR005119
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00126 HTH_1; PF03466 LysR_substrate [H]

EC number: NA

Molecular weight: Translated: 34208; Mature: 34208

Theoretical pI: Translated: 7.42; Mature: 7.42

Prosite motif: PS50931 HTH_LYSR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHHFNIRALEYLNALSKYGSLRKASKMMNVDPAAMSRMLTQLEAQAEMKVWERNNRQSLL
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
TEAGNELLHYYRSIVRGEAAVLTRLAKLKNLKGGSVSIAIGEGFITNLVSKPMQTFMTRY
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHC
PDINLSIEIAGALDAVKMLEDQQIDFAITYASAPHPKLHSHVERSHPLELIAPKGHFLTM
CCCCEEEEECCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCEEEEECCCCEEEE
KEAPVTLQDIKDVSLALIDNSTGMGRLVKQAEQMSHFTLEPKLQTNSVTALTNFVSAGLG
CCCCCCHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHHHCCC
VTFMPKLTVIDEIKSGQIEVVATELEMLSKATVKVQSLKDRALTLQAETLLDFLLENATF
EEECCCHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHCCCE
LSHDAYNI
ECCCCCCC
>Mature Secondary Structure
MHHFNIRALEYLNALSKYGSLRKASKMMNVDPAAMSRMLTQLEAQAEMKVWERNNRQSLL
CCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHH
TEAGNELLHYYRSIVRGEAAVLTRLAKLKNLKGGSVSIAIGEGFITNLVSKPMQTFMTRY
HHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHHC
PDINLSIEIAGALDAVKMLEDQQIDFAITYASAPHPKLHSHVERSHPLELIAPKGHFLTM
CCCCEEEEECCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHCCCEEEEECCCCEEEE
KEAPVTLQDIKDVSLALIDNSTGMGRLVKQAEQMSHFTLEPKLQTNSVTALTNFVSAGLG
CCCCCCHHHHCCCEEEEEECCCCHHHHHHHHHHHHCCEECCCCCCCHHHHHHHHHHHCCC
VTFMPKLTVIDEIKSGQIEVVATELEMLSKATVKVQSLKDRALTLQAETLLDFLLENATF
EEECCCHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHEEHHHHHHHHHHHCCCE
LSHDAYNI
ECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA