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The map label for this gene is ybeY [C]

Identifier: 218708743

GI number: 218708743

Start: 758526

End: 758987

Strand: Reverse

Name: ybeY [C]

Synonym: VS_0722

Alternate gene names: 218708743

Gene position: 758987-758526 (Counterclockwise)

Preceding gene: 218708744

Following gene: 218708742

Centisome position: 23.0

GC content: 44.16

Gene sequence:

>462_bases
ATGTCTATTGAACTAGACCTTCAATTAGCGGTCGAAAATGAGCAAGGTCTTCCAACTGAGCAAGATATTCAGCTTTGGTT
GGACAAGACAATTCCTCAGTTTCAAGAGAACGCTGAGTTGACGGTTCGTATCGTTGATACACAAGAAAGCCACCAGCTCA
ATCATGAATATCGTGGAAAAGACAAGCCAACTAACGTGTTGTCTTTTCCATTCGAGGCTCCTCCAGGGATCGAGTTAGAT
CTGCTGGGCGACCTCATTATCTGCCGCCAAGTTGTCGAAAAAGAAGCAGAAGAGCAAAGTAAGCCTCTGCTAGCACACTG
GGCTCATATGGTTGTACATGGCAGTCTGCATCTGCTAGGTTATGATCATATCGAAGATGATGAAGCTGAAGAGATGGAGT
CACTCGAGACAGAAATCATGCAATCTATGGGGTTTGAAGACCCTTACATTCTAGAAAAGTAA

Upstream 100 bases:

>100_bases
TGAAGAGCGCGAAGCCAAACTTCTTGAGGCTCAGCAGGCAGTTACGACACAATTAGCAACACAAAATAGTTCTGTAATTG
CAGAACAAGGTGATAAATAG

Downstream 100 bases:

>100_bases
ATTGATTCTAGTAAAGTAGGTTGCAGAGAAACAATAACTCATCGACCCTGTGATTTTCGCAGGAATCTGAGTTGTAACGT
GTGCTATCACACTTCTGATA

Product: putative metalloprotease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 153; Mature: 152

Protein sequence:

>153_residues
MSIELDLQLAVENEQGLPTEQDIQLWLDKTIPQFQENAELTVRIVDTQESHQLNHEYRGKDKPTNVLSFPFEAPPGIELD
LLGDLIICRQVVEKEAEEQSKPLLAHWAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMQSMGFEDPYILEK

Sequences:

>Translated_153_residues
MSIELDLQLAVENEQGLPTEQDIQLWLDKTIPQFQENAELTVRIVDTQESHQLNHEYRGKDKPTNVLSFPFEAPPGIELD
LLGDLIICRQVVEKEAEEQSKPLLAHWAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMQSMGFEDPYILEK
>Mature_152_residues
SIELDLQLAVENEQGLPTEQDIQLWLDKTIPQFQENAELTVRIVDTQESHQLNHEYRGKDKPTNVLSFPFEAPPGIELDL
LGDLIICRQVVEKEAEEQSKPLLAHWAHMVVHGSLHLLGYDHIEDDEAEEMESLETEIMQSMGFEDPYILEK

Specific function: Involved in rRNA and/or ribosome maturation and assembly. Required for normal 5' and 3' processing of 16S, 23S and 5S rRNAs. May have metal-dependent hydrolase activity

COG id: COG0319

COG function: function code R; Predicted metal-dependent hydrolase

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rRNA maturation factor YbeY family

Homologues:

Organism=Escherichia coli, GI1786880, Length=149, Percent_Identity=76.510067114094, Blast_Score=224, Evalue=2e-60,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RRMF_VIBSL (B7VKG1)

Other databases:

- EMBL:   FM954972
- RefSeq:   YP_002416364.1
- ProteinModelPortal:   B7VKG1
- GeneID:   7160341
- GenomeReviews:   FM954972_GR
- KEGG:   vsp:VS_0722
- HOGENOM:   HBG734136
- OMA:   FTDPYKE
- ProtClustDB:   PRK00016
- HAMAP:   MF_00009
- InterPro:   IPR023091
- InterPro:   IPR020549
- InterPro:   IPR002036
- Gene3D:   G3DSA:3.40.390.30
- TIGRFAMs:   TIGR00043

Pfam domain/function: PF02130 UPF0054

EC number: NA

Molecular weight: Translated: 17605; Mature: 17474

Theoretical pI: Translated: 4.00; Mature: 4.00

Prosite motif: PS01306 UPF0054

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSIELDLQLAVENEQGLPTEQDIQLWLDKTIPQFQENAELTVRIVDTQESHQLNHEYRGK
CCEEEEEEEEEECCCCCCCHHHHHHHHHHHCHHHHCCCEEEEEEECCCCCHHCCCHHCCC
DKPTNVLSFPFEAPPGIELDLLGDLIICRQVVEKEAEEQSKPLLAHWAHMVVHGSLHLLG
CCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEE
YDHIEDDEAEEMESLETEIMQSMGFEDPYILEK
CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECC
>Mature Secondary Structure 
SIELDLQLAVENEQGLPTEQDIQLWLDKTIPQFQENAELTVRIVDTQESHQLNHEYRGK
CEEEEEEEEEECCCCCCCHHHHHHHHHHHCHHHHCCCEEEEEEECCCCCHHCCCHHCCC
DKPTNVLSFPFEAPPGIELDLLGDLIICRQVVEKEAEEQSKPLLAHWAHMVVHGSLHLLG
CCCCCEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCEEEEE
YDHIEDDEAEEMESLETEIMQSMGFEDPYILEK
CCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA