| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is ybeZ [H]
Identifier: 218708744
GI number: 218708744
Start: 758988
End: 760109
Strand: Reverse
Name: ybeZ [H]
Synonym: VS_0723
Alternate gene names: 218708744
Gene position: 760109-758988 (Counterclockwise)
Preceding gene: 218708745
Following gene: 218708743
Centisome position: 23.04
GC content: 45.1
Gene sequence:
>1122_bases TTGAGCAATAAAATCGTTACCTTAGAGATAAATCTAGAGCCAGCAGACAACAAGCGCTTGGCAAGTTTATGCGGACCATT TGACGACAACATCAAGCATCTTGAGCGTCGTCTGGGCGTTGAGATTAATTACCGTAGCAACTTTTTCACCATTGTCGGTA AACCTCACACTACAGCCGCAGCTTTAGACATCATCAAACACCTCTATGTTGAAACGGCTCCAGTTAAAGGCAACATAATC GATATCGAACCAGAGCAAATACATCTGGCGATCACCGAGTCAGGTATTTTGGAGCAACAGGTCGAGTCTGAAATTGACTA CGGCAAAGAAGTGACCATTAAGACTAAAAAAGGCGTTATCAAACCTCGAACGCCAAACCAAGCACAGTACCTAATGAACA TGGTGACTCATGACATCACCTTTGGTATTGGGCCAGCAGGTACAGGTAAAACCTACTTAGCCGTTGCTGCAGCAGTTGAT GCACTTGAACGCCAAGAGGTTCGCCGAATCCTACTGACTCGTCCTGCTGTTGAAGCCGGTGAGAAGCTTGGTTTCCTACC GGGTGATTTAAGCCAAAAAGTAGACCCATATTTACGTCCACTTTACGATGCGCTGTTTGAGATGCTTGGCTTTGAGCGAG TTGAGAAGCTGATTGAACGTAACGTAATTGAAGTTGCGCCACTGGCTTACATGCGTGGTCGTACATTGAATGATGCGTTT ATCATTCTTGATGAGAGCCAAAACACCACGGTAGAACAGATGAAGATGTTCTTAACCCGTATCGGTTTTAACTCACGCGC TGTGATCACAGGTGATATTACGCAAATCGATTTACCTCGTGGTGCAAAATCAGGCTTACGCCATGCGACTGAAGTGCTCA ATGAAGTCGACGACATTAGCTTTAACTTCTTCATGTCTGAAGACGTCGTTCGTCACCCTGTAGTTGCTCGTATCGTCAAC GCATACGAGAAGTGGGAAGCAAAAGACCAGAAAGAGCGTAAAGAGTTTGAGAAGCGTAAACGTGAAGAGCGCGAAGCCAA ACTTCTTGAGGCTCAGCAGGCAGTTACGACACAATTAGCAACACAAAATAGTTCTGTAATTGCAGAACAAGGTGATAAAT AG
Upstream 100 bases:
>100_bases ATCTTAGAAATAGGGATATCACCATCAGAAGCCCGGTCTAAATCGGGCTTTTTGCTCTTTGTTTTATTTAAGAGTGAGTG GCACAAAATGAGAGGCTAAT
Downstream 100 bases:
>100_bases ATGTCTATTGAACTAGACCTTCAATTAGCGGTCGAAAATGAGCAAGGTCTTCCAACTGAGCAAGATATTCAGCTTTGGTT GGACAAGACAATTCCTCAGT
Product: phoH-like protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 373; Mature: 372
Protein sequence:
>373_residues MSNKIVTLEINLEPADNKRLASLCGPFDDNIKHLERRLGVEINYRSNFFTIVGKPHTTAAALDIIKHLYVETAPVKGNII DIEPEQIHLAITESGILEQQVESEIDYGKEVTIKTKKGVIKPRTPNQAQYLMNMVTHDITFGIGPAGTGKTYLAVAAAVD ALERQEVRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFERVEKLIERNVIEVAPLAYMRGRTLNDAF IILDESQNTTVEQMKMFLTRIGFNSRAVITGDITQIDLPRGAKSGLRHATEVLNEVDDISFNFFMSEDVVRHPVVARIVN AYEKWEAKDQKERKEFEKRKREEREAKLLEAQQAVTTQLATQNSSVIAEQGDK
Sequences:
>Translated_373_residues MSNKIVTLEINLEPADNKRLASLCGPFDDNIKHLERRLGVEINYRSNFFTIVGKPHTTAAALDIIKHLYVETAPVKGNII DIEPEQIHLAITESGILEQQVESEIDYGKEVTIKTKKGVIKPRTPNQAQYLMNMVTHDITFGIGPAGTGKTYLAVAAAVD ALERQEVRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFERVEKLIERNVIEVAPLAYMRGRTLNDAF IILDESQNTTVEQMKMFLTRIGFNSRAVITGDITQIDLPRGAKSGLRHATEVLNEVDDISFNFFMSEDVVRHPVVARIVN AYEKWEAKDQKERKEFEKRKREEREAKLLEAQQAVTTQLATQNSSVIAEQGDK >Mature_372_residues SNKIVTLEINLEPADNKRLASLCGPFDDNIKHLERRLGVEINYRSNFFTIVGKPHTTAAALDIIKHLYVETAPVKGNIID IEPEQIHLAITESGILEQQVESEIDYGKEVTIKTKKGVIKPRTPNQAQYLMNMVTHDITFGIGPAGTGKTYLAVAAAVDA LERQEVRRILLTRPAVEAGEKLGFLPGDLSQKVDPYLRPLYDALFEMLGFERVEKLIERNVIEVAPLAYMRGRTLNDAFI ILDESQNTTVEQMKMFLTRIGFNSRAVITGDITQIDLPRGAKSGLRHATEVLNEVDDISFNFFMSEDVVRHPVVARIVNA YEKWEAKDQKERKEFEKRKREEREAKLLEAQQAVTTQLATQNSSVIAEQGDK
Specific function: Unknown
COG id: COG1702
COG function: function code T; Phosphate starvation-inducible protein PhoH, predicted ATPase
Gene ontology:
Cell location: Cytoplasm (Potential) [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Belongs to the phoH family [H]
Homologues:
Organism=Escherichia coli, GI145693103, Length=344, Percent_Identity=79.0697674418605, Blast_Score=541, Evalue=1e-155, Organism=Escherichia coli, GI1787257, Length=205, Percent_Identity=45.3658536585366, Blast_Score=188, Evalue=4e-49,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003714 [H]
Pfam domain/function: PF02562 PhoH [H]
EC number: NA
Molecular weight: Translated: 42061; Mature: 41930
Theoretical pI: Translated: 5.75; Mature: 5.75
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 2.1 %Met (Translated Protein) 2.4 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 2.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNKIVTLEINLEPADNKRLASLCGPFDDNIKHLERRLGVEINYRSNFFTIVGKPHTTAA CCCCEEEEEEEECCCCCCHHHHHCCCCCHHHHHHHHHHCEEEEECCCEEEEEECCCCHHH ALDIIKHLYVETAPVKGNIIDIEPEQIHLAITESGILEQQVESEIDYGKEVTIKTKKGVI HHHHHHHHHHCCCCCCCCEEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEEECCCEE KPRTPNQAQYLMNMVTHDITFGIGPAGTGKTYLAVAAAVDALERQEVRRILLTRPAVEAG CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH EKLGFLPGDLSQKVDPYLRPLYDALFEMLGFERVEKLIERNVIEVAPLAYMRGRTLNDAF HHCCCCCCCHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHCCCCCCCEE IILDESQNTTVEQMKMFLTRIGFNSRAVITGDITQIDLPRGAKSGLRHATEVLNEVDDIS EEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCEEEECCCCHHHHHHHHHHHHHHHHCCE FNFFMSEDVVRHPVVARIVNAYEKWEAKDQKERKEFEKRKREEREAKLLEAQQAVTTQLA EEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TQNSSVIAEQGDK HCCCCEECCCCCC >Mature Secondary Structure SNKIVTLEINLEPADNKRLASLCGPFDDNIKHLERRLGVEINYRSNFFTIVGKPHTTAA CCCEEEEEEEECCCCCCHHHHHCCCCCHHHHHHHHHHCEEEEECCCEEEEEECCCCHHH ALDIIKHLYVETAPVKGNIIDIEPEQIHLAITESGILEQQVESEIDYGKEVTIKTKKGVI HHHHHHHHHHCCCCCCCCEEEECCCEEEEEEECCCHHHHHHHHHHCCCCEEEEEECCCEE KPRTPNQAQYLMNMVTHDITFGIGPAGTGKTYLAVAAAVDALERQEVRRILLTRPAVEAG CCCCCCHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH EKLGFLPGDLSQKVDPYLRPLYDALFEMLGFERVEKLIERNVIEVAPLAYMRGRTLNDAF HHCCCCCCCHHHHCCHHHHHHHHHHHHHHCHHHHHHHHHCCHHHHHHHHHHCCCCCCCEE IILDESQNTTVEQMKMFLTRIGFNSRAVITGDITQIDLPRGAKSGLRHATEVLNEVDDIS EEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCEEEECCCCHHHHHHHHHHHHHHHHCCE FNFFMSEDVVRHPVVARIVNAYEKWEAKDQKERKEFEKRKREEREAKLLEAQQAVTTQLA EEEEECCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH TQNSSVIAEQGDK HCCCCEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]