| Definition | Vibrio splendidus LGP32 chromosome 1, complete genome. |
|---|---|
| Accession | NC_011753 |
| Length | 3,299,303 |
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The map label for this gene is 218708711
Identifier: 218708711
GI number: 218708711
Start: 724334
End: 724903
Strand: Reverse
Name: 218708711
Synonym: VS_0690
Alternate gene names: NA
Gene position: 724903-724334 (Counterclockwise)
Preceding gene: 218708712
Following gene: 218708710
Centisome position: 21.97
GC content: 41.23
Gene sequence:
>570_bases ATGAAAAAACTGATTTTGGCTGCTTCTATTTTGGCTTTGACAGCATGTTCAGCCCCTCAGAAAGAACAGATCAACGTAAT GCCAGAAGCTTCACTAAGCTCAAGCAACCTTGTACAAGGCAAAACATACACACTAACCAGTAAAGATGTTCGTGCCGCTC AATATGTTGCATTGGTTGATAGTGGCCGTTCAAACATTCAGCCAATTCACGCTAAGCAAAACATGCGTATTTCTCTAGAA AACGCTATTGCTCAACAATTAGAGTCTCAAGGCTTTCGTGCAAGCGTAAACAGTGAAAACTCAATTGTTTTAGAGATTCA AGAAGCGCTCGTTACCGTCAAGCACACCATCATGGAAAACCAAATGGATGGTAAAGTAACACTTGAAGTAACCGCTGAAA CGCCTGAAGGCAAGCTAGTTAAGACATTCAATGGTACAGCAACTCGTACAGGCGCATTAAGTGCATCAAATGACGATATC GCAACGGTACTAAACGATGTTATCGACTTAGTTCTTAAAGAGATTGCCAATGACCAAGAGCTGCAAACTTACATGAAGGA ACGTTTCTAA
Upstream 100 bases:
>100_bases AGCAACAAGAGAACCTGCGAATTTTAATAAATAAGCAGAAACGACGTCACAAGAATTTAAGATACCGAGCTCCTGGTGTG AATTTAGAAAGGATAAAGGA
Downstream 100 bases:
>100_bases TGGGACGCATTCTATCTTCTATTGCATTGATGTTGGTGAGCGTGAGCGTTTGGGCTGGTCCTAAAGTGAACGTAGAAACA ACATTAGGCGGCTTCACTAT
Product: putative lipoprotein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 189; Mature: 189
Protein sequence:
>189_residues MKKLILAASILALTACSAPQKEQINVMPEASLSSSNLVQGKTYTLTSKDVRAAQYVALVDSGRSNIQPIHAKQNMRISLE NAIAQQLESQGFRASVNSENSIVLEIQEALVTVKHTIMENQMDGKVTLEVTAETPEGKLVKTFNGTATRTGALSASNDDI ATVLNDVIDLVLKEIANDQELQTYMKERF
Sequences:
>Translated_189_residues MKKLILAASILALTACSAPQKEQINVMPEASLSSSNLVQGKTYTLTSKDVRAAQYVALVDSGRSNIQPIHAKQNMRISLE NAIAQQLESQGFRASVNSENSIVLEIQEALVTVKHTIMENQMDGKVTLEVTAETPEGKLVKTFNGTATRTGALSASNDDI ATVLNDVIDLVLKEIANDQELQTYMKERF >Mature_189_residues MKKLILAASILALTACSAPQKEQINVMPEASLSSSNLVQGKTYTLTSKDVRAAQYVALVDSGRSNIQPIHAKQNMRISLE NAIAQQLESQGFRASVNSENSIVLEIQEALVTVKHTIMENQMDGKVTLEVTAETPEGKLVKTFNGTATRTGALSASNDDI ATVLNDVIDLVLKEIANDQELQTYMKERF
Specific function: Unknown
COG id: COG3056
COG function: function code M; Uncharacterized lipoprotein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20580; Mature: 20580
Theoretical pI: Translated: 5.03; Mature: 5.03
Prosite motif: PS00013 PROKAR_LIPOPROTEIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 3.2 %Met (Translated Protein) 3.7 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 3.2 %Met (Mature Protein) 3.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKKLILAASILALTACSAPQKEQINVMPEASLSSSNLVQGKTYTLTSKDVRAAQYVALVD CCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCEECCCEEEEECCCHHHHHEEEEEE SGRSNIQPIHAKQNMRISLENAIAQQLESQGFRASVNSENSIVLEIQEALVTVKHTIMEN CCCCCCCEEECCCCCEEEHHHHHHHHHHHCCCEEECCCCCEEEEEHHHHHHHHHHHHHHC QMDGKVTLEVTAETPEGKLVKTFNGTATRTGALSASNDDIATVLNDVIDLVLKEIANDQE CCCCEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHH LQTYMKERF HHHHHHHCC >Mature Secondary Structure MKKLILAASILALTACSAPQKEQINVMPEASLSSSNLVQGKTYTLTSKDVRAAQYVALVD CCHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCEECCCEEEEECCCHHHHHEEEEEE SGRSNIQPIHAKQNMRISLENAIAQQLESQGFRASVNSENSIVLEIQEALVTVKHTIMEN CCCCCCCEEECCCCCEEEHHHHHHHHHHHCCCEEECCCCCEEEEEHHHHHHHHHHHHHHC QMDGKVTLEVTAETPEGKLVKTFNGTATRTGALSASNDDIATVLNDVIDLVLKEIANDQE CCCCEEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHH LQTYMKERF HHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA