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The map label for this gene is ygdK [H]

Identifier: 218708703

GI number: 218708703

Start: 716599

End: 717027

Strand: Direct

Name: ygdK [H]

Synonym: VS_0682

Alternate gene names: 218708703

Gene position: 716599-717027 (Clockwise)

Preceding gene: 218708702

Following gene: 218708708

Centisome position: 21.72

GC content: 44.29

Gene sequence:

>429_bases
ATGACCACATTCCCAAGCTTTCCATTCGGCAAAGAAATTACCAGTGATGATATTGTCGCAAAAATGCAGACTTTCAGCGG
CTGGGAAGATCGTTATCGCCAGGTGATTCAGTGGGGTAAGAAACTGCCTAGCATGCCTGATGAACTGAAAAGTGAACAGG
TTGTCGTATCTGGTTGTGAAAGCCAAGTGTGGTTGGTTTCTCAAAATATCGACGGTGTTTGGCGCTTTTGTGCTGATTCT
GATGCGCGTATCGTTCGCGGTCTGATTGCATTAGTGATGGCTGCGTATGATGGAAAAACATCAGAGCAGATTCAAGCGTT
CGATATCGATGGATACTTTGAACAAATCGGTTTAATTACCCATCTAAGCCCATCTCGCGGCAATGGATTAAAAGCGATTG
TTGCTCAAATCCAAGAGCTAAGTGCTTAA

Upstream 100 bases:

>100_bases
ACCTTTGGTTTTGTGGCGGTTTCACGTATCGTAGAAAAGATCGTTCAAAAGCACGCTAAGTAACGTCTTCTTCTCAATTA
ACAATCGACTGGATATTAAA

Downstream 100 bases:

>100_bases
CATTTCTTAGATACACAGAAACAAAAAGGGTTGACGCTAAACGCCAACCCTACATAATTTCGCTACTCGCTACTCGCTAC
TCGCTACTCGCTACTCGCTA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 142; Mature: 141

Protein sequence:

>142_residues
MTTFPSFPFGKEITSDDIVAKMQTFSGWEDRYRQVIQWGKKLPSMPDELKSEQVVVSGCESQVWLVSQNIDGVWRFCADS
DARIVRGLIALVMAAYDGKTSEQIQAFDIDGYFEQIGLITHLSPSRGNGLKAIVAQIQELSA

Sequences:

>Translated_142_residues
MTTFPSFPFGKEITSDDIVAKMQTFSGWEDRYRQVIQWGKKLPSMPDELKSEQVVVSGCESQVWLVSQNIDGVWRFCADS
DARIVRGLIALVMAAYDGKTSEQIQAFDIDGYFEQIGLITHLSPSRGNGLKAIVAQIQELSA
>Mature_141_residues
TTFPSFPFGKEITSDDIVAKMQTFSGWEDRYRQVIQWGKKLPSMPDELKSEQVVVSGCESQVWLVSQNIDGVWRFCADSD
ARIVRGLIALVMAAYDGKTSEQIQAFDIDGYFEQIGLITHLSPSRGNGLKAIVAQIQELSA

Specific function: Unknown

COG id: COG2166

COG function: function code R; SufE protein probably involved in Fe-S center assembly

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sufE family [H]

Homologues:

Organism=Escherichia coli, GI1789176, Length=133, Percent_Identity=42.1052631578947, Blast_Score=119, Evalue=6e-29,
Organism=Escherichia coli, GI1787969, Length=109, Percent_Identity=44.954128440367, Blast_Score=103, Evalue=4e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR017763
- InterPro:   IPR003808 [H]

Pfam domain/function: PF02657 SufE [H]

EC number: NA

Molecular weight: Translated: 15836; Mature: 15705

Theoretical pI: Translated: 4.55; Mature: 4.55

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTTFPSFPFGKEITSDDIVAKMQTFSGWEDRYRQVIQWGKKLPSMPDELKSEQVVVSGCE
CCCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHCCCCEEEECCC
SQVWLVSQNIDGVWRFCADSDARIVRGLIALVMAAYDGKTSEQIQAFDIDGYFEQIGLIT
CEEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHH
HLSPSRGNGLKAIVAQIQELSA
CCCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure 
TTFPSFPFGKEITSDDIVAKMQTFSGWEDRYRQVIQWGKKLPSMPDELKSEQVVVSGCE
CCCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHCCCCEEEECCC
SQVWLVSQNIDGVWRFCADSDARIVRGLIALVMAAYDGKTSEQIQAFDIDGYFEQIGLIT
CEEEEEECCCCHHHHHHCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCHHHHHHHHHH
HLSPSRGNGLKAIVAQIQELSA
CCCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]