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The map label for this gene is smpA [H]

Identifier: 218708666

GI number: 218708666

Start: 670734

End: 671219

Strand: Reverse

Name: smpA [H]

Synonym: VS_0645

Alternate gene names: 218708666

Gene position: 671219-670734 (Counterclockwise)

Preceding gene: 218708667

Following gene: 218708663

Centisome position: 20.34

GC content: 40.74

Gene sequence:

>486_bases
TTGGCAATTTTGCAACTTAATTCAAAATTGCCAGTCATAACAAGCTCAAAGCGCAAGGAGCTTTTTACTTCTTGCTGGAG
CTTGTTTATTATCAAGCAGTATTTTAGCGAAGAAAGATCTCAAACTATGCGAATTAAAAAGTGGTTAGTTGCAGTTCCAC
TTGCACTAACAATGTTGACCGGTTGCTCTCTACTAGAGAAGTTGGTTTATCGAATTGACATCAATCAGGGTAACTATGTT
GAACAAGAAGCTGTCGATCAGCTCAAGTTTGGCATGACAAAAACACAAGTTCGTTACGTTATGGGCTCACCTATGCTTAT
CGAAAATGGCTACCCAGATACGTGGTACTACATTTACCACCACCAAAAAGGCCATAACGACCCTATCCAGAAAAACCTTG
TCGTGAACTTTGATGCCACTGGCACTCTAGTAACGATCAATGGTGATTTTGAAGCCAGTGATGAGTTCTTCGAAAGCCTT
CGCTAG

Upstream 100 bases:

>100_bases
GCAGCCAAATTACCGAATCGACGCTTGCCAATGCAAAAGAGTTATTAATCGCAGCATAGGTTACATATTCAGCAACTTTC
TGATAATTTACCGAAAATTC

Downstream 100 bases:

>100_bases
CTTTCCAGTCGACAAGGTATGAATCGCAAAAGCCTGCTCACTTCACACGAGCAGGATTTTTAATATCTGCTAACAAATTA
GCGGCGTGTCTAACCAACAG

Product: small protein A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 161; Mature: 160

Protein sequence:

>161_residues
MAILQLNSKLPVITSSKRKELFTSCWSLFIIKQYFSEERSQTMRIKKWLVAVPLALTMLTGCSLLEKLVYRIDINQGNYV
EQEAVDQLKFGMTKTQVRYVMGSPMLIENGYPDTWYYIYHHQKGHNDPIQKNLVVNFDATGTLVTINGDFEASDEFFESL
R

Sequences:

>Translated_161_residues
MAILQLNSKLPVITSSKRKELFTSCWSLFIIKQYFSEERSQTMRIKKWLVAVPLALTMLTGCSLLEKLVYRIDINQGNYV
EQEAVDQLKFGMTKTQVRYVMGSPMLIENGYPDTWYYIYHHQKGHNDPIQKNLVVNFDATGTLVTINGDFEASDEFFESL
R
>Mature_160_residues
AILQLNSKLPVITSSKRKELFTSCWSLFIIKQYFSEERSQTMRIKKWLVAVPLALTMLTGCSLLEKLVYRIDINQGNYVE
QEAVDQLKFGMTKTQVRYVMGSPMLIENGYPDTWYYIYHHQKGHNDPIQKNLVVNFDATGTLVTINGDFEASDEFFESLR

Specific function: Unknown

COG id: COG2913

COG function: function code J; Small protein A (tmRNA-binding)

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smpA/omlA family [H]

Homologues:

Organism=Escherichia coli, GI87082138, Length=105, Percent_Identity=39.0476190476191, Blast_Score=97, Evalue=6e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007450 [H]

Pfam domain/function: PF04355 SmpA_OmlA [H]

EC number: NA

Molecular weight: Translated: 18672; Mature: 18541

Theoretical pI: Translated: 7.50; Mature: 7.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.2 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
5.0 %Cys+Met (Translated Protein)
1.2 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
4.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAILQLNSKLPVITSSKRKELFTSCWSLFIIKQYFSEERSQTMRIKKWLVAVPLALTMLT
CEEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GCSLLEKLVYRIDINQGNYVEQEAVDQLKFGMTKTQVRYVMGSPMLIENGYPDTWYYIYH
HHHHHHHHHHEEECCCCCEEHHHHHHHHHHCCHHHHHHHHCCCCEEEECCCCCCEEEEEE
HQKGHNDPIQKNLVVNFDATGTLVTINGDFEASDEFFESLR
ECCCCCCCCCCCEEEEECCCCEEEEEECCCCCCHHHHHHCC
>Mature Secondary Structure 
AILQLNSKLPVITSSKRKELFTSCWSLFIIKQYFSEERSQTMRIKKWLVAVPLALTMLT
EEEEECCCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GCSLLEKLVYRIDINQGNYVEQEAVDQLKFGMTKTQVRYVMGSPMLIENGYPDTWYYIYH
HHHHHHHHHHEEECCCCCEEHHHHHHHHHHCCHHHHHHHHCCCCEEEECCCCCCEEEEEE
HQKGHNDPIQKNLVVNFDATGTLVTINGDFEASDEFFESLR
ECCCCCCCCCCCEEEEECCCCEEEEEECCCCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA