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The map label for this gene is raiA [H]

Identifier: 218708591

GI number: 218708591

Start: 582737

End: 583072

Strand: Reverse

Name: raiA [H]

Synonym: VS_0557

Alternate gene names: 218708591

Gene position: 583072-582737 (Counterclockwise)

Preceding gene: 218708592

Following gene: 218708590

Centisome position: 17.67

GC content: 41.07

Gene sequence:

>336_bases
ATGAAAATGAACATCACTGGTAAAAATATCGACATTACCTCTGCAATCCGTGATCACATAGAAAGCAAATTTAAGAAGCT
GGATAAATGGCAAGTAGACATCATTGGTTGCCAAGCGAGCTTTAGCGAAGAACCAAATAAAAAGAAAAAATTTGAAGCCG
TTCTAACGGTACCAAAAGGCCAACTTGTTGCTTCATCAATTCATGACGACCTCTACGTCGCTATCAACGAAGTAGAACAA
AAACTAGAGCGTCAACTCAACAAGCTGCGCCATAAACCAGAAGCGCGCCGCGCTGAAAAGCCTGAAATCGAAGAGCTAGA
AGCTGAAGTAGAATAA

Upstream 100 bases:

>100_bases
TTATCCCACCCAACCAAAACAAGATCTAGATCACATTCTTTATTCCTGAAAGTCGTAATCTGAAGTTAACCCATGAGGGA
TACAACAGAGGAAAACTTCT

Downstream 100 bases:

>100_bases
GGAAATATGACAGATTAAAAAATAGCGCCTCAGGGCGCTATTTTTTTGCTTGACGCTCGTAGCTCGCTTGCTTATTGTGT
TTAAACATTCATAAAACAAT

Product: putative sigma-54 modulation protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 111; Mature: 111

Protein sequence:

>111_residues
MKMNITGKNIDITSAIRDHIESKFKKLDKWQVDIIGCQASFSEEPNKKKKFEAVLTVPKGQLVASSIHDDLYVAINEVEQ
KLERQLNKLRHKPEARRAEKPEIEELEAEVE

Sequences:

>Translated_111_residues
MKMNITGKNIDITSAIRDHIESKFKKLDKWQVDIIGCQASFSEEPNKKKKFEAVLTVPKGQLVASSIHDDLYVAINEVEQ
KLERQLNKLRHKPEARRAEKPEIEELEAEVE
>Mature_111_residues
MKMNITGKNIDITSAIRDHIESKFKKLDKWQVDIIGCQASFSEEPNKKKKFEAVLTVPKGQLVASSIHDDLYVAINEVEQ
KLERQLNKLRHKPEARRAEKPEIEELEAEVE

Specific function: During environmental stress such as cold shock or excessive cell density at stationary phase, stabilizes the 70S ribosome against dissociation, inhibits translation initiation and increase translation accuracy. When normal growth conditions are restored,

COG id: COG1544

COG function: function code J; Ribosome-associated protein Y (PSrp-1)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma(54) modulation protein family [H]

Homologues:

Organism=Escherichia coli, GI1788949, Length=100, Percent_Identity=52, Blast_Score=101, Evalue=1e-23,

Paralogues:

None

Copy number: 600 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003489 [H]

Pfam domain/function: PF02482 Ribosomal_S30AE [H]

EC number: NA

Molecular weight: Translated: 12813; Mature: 12813

Theoretical pI: Translated: 6.80; Mature: 6.80

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKMNITGKNIDITSAIRDHIESKFKKLDKWQVDIIGCQASFSEEPNKKKKFEAVLTVPKG
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHEECCCC
QLVASSIHDDLYVAINEVEQKLERQLNKLRHKPEARRAEKPEIEELEAEVE
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHCCCC
>Mature Secondary Structure
MKMNITGKNIDITSAIRDHIESKFKKLDKWQVDIIGCQASFSEEPNKKKKFEAVLTVPKG
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCHHHHHHHHEECCCC
QLVASSIHDDLYVAINEVEQKLERQLNKLRHKPEARRAEKPEIEELEAEVE
HHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]