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The map label for this gene is yraM [H]

Identifier: 218708476

GI number: 218708476

Start: 447952

End: 449769

Strand: Reverse

Name: yraM [H]

Synonym: VS_0439

Alternate gene names: 218708476

Gene position: 449769-447952 (Counterclockwise)

Preceding gene: 218708500

Following gene: 218708475

Centisome position: 13.63

GC content: 45.71

Gene sequence:

>1818_bases
ATGGCAACGATGAACCATAAGAGACTCAGTGTACCACGCTTACTCACTCCAATTGCATTAGCAATTACATTGGCGGCTTG
TTCTTCAGGTCCTCAAGCACCAACGCGTGTTGATATTACACTAGATCCAGCGCAATCAACTGAAAGTTACATGATGCAGG
CGGATAGTAGCAAAGGAAGTCTACAAAACGACTGGTTAATCATGGCGCTTAAGGCTTCTGTGCAAGCTGGAAAAACCGAT
CAAGCGACTCTGCTGATCAAACGCTTAGCCAAACAAGAGCTGAGTGAAGTTCAACAAGCAGAATGGCAACTAGCTCGCGC
TCAACTGCTGGTGAATAACTCGCAACCACAGCAAGCGTACAGCCAACTGAACTTTCAACCTTGGTGGAAGCTTCCGAACG
AGCAATGGAAAGATTATCACGAGCTACGCGCCAATATTTCTGAAATACAGAATGAGTATTTCGAAGCGAGCCGTGAGTTA
GTCTTTTATTCTGAATATCTGGACGCTAGCGACGAAAGCCAACAGCAAACGGCCGACCGTATTTGGCAGAACCTGAATAG
CTACTCTCAATACGAGATTCTAGAACTGAAAACATCGCCGACAGAAGATGTGCTTTCAGGTTGGTTGCAACTGGCTATCT
ACATGAAGACGCTGAATTCGAACCTTCCAAACCTACAGGAAACCCTGGCTGATTGGTTAGCTGAGAACCCTCGTCACCCA
GCAGCGCTTTATACACCTCAAGCGATCACCGACATCTTGGCACTAGAGATCAGCAAACCAACCAGCACTGCGCTGCTGCT
GCCGCTAACAGGTAAGTACGGTAAGCAAGCGCAACTTGTGCGTGATGGTTTCATCTTTGCGATGATGAATGACAAAGAGC
GTGAAGAAGATGCAACGCTGACGGTAATGGATACCAACGTACAAAGTGCCGCTGAAATTAAAGCGAAACTGGAAGAGAAT
AACGTTGATTTCATCGTTGGCCCTCTGATTAAGAGCAATATCACCAAGCTTCAACAAGCGCAGAAAAACCACGAAAACTC
GATTCCAGCATTAGCTCTTAATATTCCAACTCAGCTAGAACCAGATACTAATATTTGTTATCTCGCTTTATCGCCAGAAC
AAGAAGTCGCTCAGGCTGCGAAACACCTTTTTGCACAAGGCTATAAGTACCCACTTATTCTTGCACCCAAAGGACGCTTA
GGTGACCGCGTTAAGCAAGCATTTAACGAAGAGTGGCAGAAATACAGCAACAACGACGTTGCAATCAGCTTCTTCTCTAA
CAAACGCCAACTGCAGCGTAATGTGAATCAGATTTTCGGTTTACAAGAGAGCCAACAACGTATCGCTCAAATGGATGGGC
TACTTAACCTAGACCTAGAAACAGAACCACGCAGTCGTCGTGATATCGATTCTGTCTACATTGTCGCTAAGAACTCAGAG
CTAACACTCATCAAGCCCTTCATTGAAGTTGCAATTAACCCTGATGCTAGCCAACCTGCACTGTTTTCAAACTCACGCAG
CAACAGCGGTGACAAGCAATATGAAGACCTAACGGGTGTCTTCTACAGCGATATCCCGCTATTGGTCGAGAACAAAAACG
AGCTTAACAAAGCGCTTAATGACCTATGGCCTTCACACTCGAACAGCCAAAAGCGTCTACAAGCACTAGGAATGGATGCA
TACTATCTAATGGATGCACTACCACAGATGAAAGCCGTACAAGATTACAGCATTACAGGTGAAACCGGCGTATTAACCAT
CGACAACAACTGTGTTGTTCAACGTGAAATCAGCTGGGCAGAGCATGGGGCTTTTTAG

Upstream 100 bases:

>100_bases
AGTAGGGCTCTCTGTGAGCAAGGTTTTGTTATCTGTCATTTGTTTACCATCACTTCAACGATTAATATAGATACAAATTT
ATACGGAATTTAAAGAACTC

Downstream 100 bases:

>100_bases
CCGTAAGTTCCTATCCAAGCCAACAATCACCCACAAACAAGTGGGTGATAAATACGAGACCGTGGCAAAGAATTATTTAG
TTCGCCACGGTTTATCGTTA

Product: LppC putative lipoprotein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 605; Mature: 604

Protein sequence:

>605_residues
MATMNHKRLSVPRLLTPIALAITLAACSSGPQAPTRVDITLDPAQSTESYMMQADSSKGSLQNDWLIMALKASVQAGKTD
QATLLIKRLAKQELSEVQQAEWQLARAQLLVNNSQPQQAYSQLNFQPWWKLPNEQWKDYHELRANISEIQNEYFEASREL
VFYSEYLDASDESQQQTADRIWQNLNSYSQYEILELKTSPTEDVLSGWLQLAIYMKTLNSNLPNLQETLADWLAENPRHP
AALYTPQAITDILALEISKPTSTALLLPLTGKYGKQAQLVRDGFIFAMMNDKEREEDATLTVMDTNVQSAAEIKAKLEEN
NVDFIVGPLIKSNITKLQQAQKNHENSIPALALNIPTQLEPDTNICYLALSPEQEVAQAAKHLFAQGYKYPLILAPKGRL
GDRVKQAFNEEWQKYSNNDVAISFFSNKRQLQRNVNQIFGLQESQQRIAQMDGLLNLDLETEPRSRRDIDSVYIVAKNSE
LTLIKPFIEVAINPDASQPALFSNSRSNSGDKQYEDLTGVFYSDIPLLVENKNELNKALNDLWPSHSNSQKRLQALGMDA
YYLMDALPQMKAVQDYSITGETGVLTIDNNCVVQREISWAEHGAF

Sequences:

>Translated_605_residues
MATMNHKRLSVPRLLTPIALAITLAACSSGPQAPTRVDITLDPAQSTESYMMQADSSKGSLQNDWLIMALKASVQAGKTD
QATLLIKRLAKQELSEVQQAEWQLARAQLLVNNSQPQQAYSQLNFQPWWKLPNEQWKDYHELRANISEIQNEYFEASREL
VFYSEYLDASDESQQQTADRIWQNLNSYSQYEILELKTSPTEDVLSGWLQLAIYMKTLNSNLPNLQETLADWLAENPRHP
AALYTPQAITDILALEISKPTSTALLLPLTGKYGKQAQLVRDGFIFAMMNDKEREEDATLTVMDTNVQSAAEIKAKLEEN
NVDFIVGPLIKSNITKLQQAQKNHENSIPALALNIPTQLEPDTNICYLALSPEQEVAQAAKHLFAQGYKYPLILAPKGRL
GDRVKQAFNEEWQKYSNNDVAISFFSNKRQLQRNVNQIFGLQESQQRIAQMDGLLNLDLETEPRSRRDIDSVYIVAKNSE
LTLIKPFIEVAINPDASQPALFSNSRSNSGDKQYEDLTGVFYSDIPLLVENKNELNKALNDLWPSHSNSQKRLQALGMDA
YYLMDALPQMKAVQDYSITGETGVLTIDNNCVVQREISWAEHGAF
>Mature_604_residues
ATMNHKRLSVPRLLTPIALAITLAACSSGPQAPTRVDITLDPAQSTESYMMQADSSKGSLQNDWLIMALKASVQAGKTDQ
ATLLIKRLAKQELSEVQQAEWQLARAQLLVNNSQPQQAYSQLNFQPWWKLPNEQWKDYHELRANISEIQNEYFEASRELV
FYSEYLDASDESQQQTADRIWQNLNSYSQYEILELKTSPTEDVLSGWLQLAIYMKTLNSNLPNLQETLADWLAENPRHPA
ALYTPQAITDILALEISKPTSTALLLPLTGKYGKQAQLVRDGFIFAMMNDKEREEDATLTVMDTNVQSAAEIKAKLEENN
VDFIVGPLIKSNITKLQQAQKNHENSIPALALNIPTQLEPDTNICYLALSPEQEVAQAAKHLFAQGYKYPLILAPKGRLG
DRVKQAFNEEWQKYSNNDVAISFFSNKRQLQRNVNQIFGLQESQQRIAQMDGLLNLDLETEPRSRRDIDSVYIVAKNSEL
TLIKPFIEVAINPDASQPALFSNSRSNSGDKQYEDLTGVFYSDIPLLVENKNELNKALNDLWPSHSNSQKRLQALGMDAY
YLMDALPQMKAVQDYSITGETGVLTIDNNCVVQREISWAEHGAF

Specific function: Unknown

COG id: COG3107

COG function: function code R; Putative lipoprotein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: To H.influenzae HI_1655 [H]

Homologues:

Organism=Escherichia coli, GI1789537, Length=321, Percent_Identity=34.5794392523364, Blast_Score=174, Evalue=1e-44,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR007443 [H]

Pfam domain/function: PF04348 LppC [H]

EC number: NA

Molecular weight: Translated: 68295; Mature: 68164

Theoretical pI: Translated: 4.69; Mature: 4.69

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MATMNHKRLSVPRLLTPIALAITLAACSSGPQAPTRVDITLDPAQSTESYMMQADSSKGS
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHCCCCCCCC
LQNDWLIMALKASVQAGKTDQATLLIKRLAKQELSEVQQAEWQLARAQLLVNNSQPQQAY
CCCCEEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
SQLNFQPWWKLPNEQWKDYHELRANISEIQNEYFEASRELVFYSEYLDASDESQQQTADR
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHCCCCCCHHHHHHHH
IWQNLNSYSQYEILELKTSPTEDVLSGWLQLAIYMKTLNSNLPNLQETLADWLAENPRHP
HHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC
AALYTPQAITDILALEISKPTSTALLLPLTGKYGKQAQLVRDGFIFAMMNDKEREEDATL
CEEECHHHHHHHHHEEECCCCCCEEEEEECCCCCCCHHHHHCCEEEEEECCCCCCCCCEE
TVMDTNVQSAAEIKAKLEENNVDFIVGPLIKSNITKLQQAQKNHENSIPALALNIPTQLE
EEEECCCHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC
PDTNICYLALSPEQEVAQAAKHLFAQGYKYPLILAPKGRLGDRVKQAFNEEWQKYSNNDV
CCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCE
AISFFSNKRQLQRNVNQIFGLQESQQRIAQMDGLLNLDLETEPRSRRDIDSVYIVAKNSE
EEEEECCHHHHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEEEECCC
LTLIKPFIEVAINPDASQPALFSNSRSNSGDKQYEDLTGVFYSDIPLLVENKNELNKALN
EEEEEEEHHEEECCCCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCEEEECHHHHHHHHH
DLWPSHSNSQKRLQALGMDAYYLMDALPQMKAVQDYSITGETGVLTIDNNCVVQREISWA
HHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEECCCCEEEEECCCEEEEEECCHH
EHGAF
HCCCC
>Mature Secondary Structure 
ATMNHKRLSVPRLLTPIALAITLAACSSGPQAPTRVDITLDPAQSTESYMMQADSSKGS
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHCCCCCCCC
LQNDWLIMALKASVQAGKTDQATLLIKRLAKQELSEVQQAEWQLARAQLLVNNSQPQQAY
CCCCEEEEEEEHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
SQLNFQPWWKLPNEQWKDYHELRANISEIQNEYFEASRELVFYSEYLDASDESQQQTADR
HHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEHHHCCCCCCHHHHHHHH
IWQNLNSYSQYEILELKTSPTEDVLSGWLQLAIYMKTLNSNLPNLQETLADWLAENPRHP
HHHHCCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCC
AALYTPQAITDILALEISKPTSTALLLPLTGKYGKQAQLVRDGFIFAMMNDKEREEDATL
CEEECHHHHHHHHHEEECCCCCCEEEEEECCCCCCCHHHHHCCEEEEEECCCCCCCCCEE
TVMDTNVQSAAEIKAKLEENNVDFIVGPLIKSNITKLQQAQKNHENSIPALALNIPTQLE
EEEECCCHHHHHHHHHHHCCCCCEEECCHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCC
PDTNICYLALSPEQEVAQAAKHLFAQGYKYPLILAPKGRLGDRVKQAFNEEWQKYSNNDV
CCCCEEEEEECCHHHHHHHHHHHHHCCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCE
AISFFSNKRQLQRNVNQIFGLQESQQRIAQMDGLLNLDLETEPRSRRDIDSVYIVAKNSE
EEEEECCHHHHHHHHHHHHCCCHHHHHHHHHCCCEEECCCCCCCCCCCCCEEEEEEECCC
LTLIKPFIEVAINPDASQPALFSNSRSNSGDKQYEDLTGVFYSDIPLLVENKNELNKALN
EEEEEEEHHEEECCCCCCCCEECCCCCCCCCHHHHHHHHHHHCCCCEEEECHHHHHHHHH
DLWPSHSNSQKRLQALGMDAYYLMDALPQMKAVQDYSITGETGVLTIDNNCVVQREISWA
HHCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCEECCCCEEEEECCCEEEEEECCHH
EHGAF
HCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]