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The map label for this gene is yraN [C]

Identifier: 218708475

GI number: 218708475

Start: 447567

End: 447998

Strand: Reverse

Name: yraN [C]

Synonym: VS_0438

Alternate gene names: 218708475

Gene position: 447998-447567 (Counterclockwise)

Preceding gene: 218708476

Following gene: 218708474

Centisome position: 13.58

GC content: 43.29

Gene sequence:

>432_bases
GTGTTGTTCAACGTGAAATCAGCTGGGCAGAGCATGGGGCTTTTTAGCCGTAAGTTCCTATCCAAGCCAACAATCACCCA
CAAACAAGTGGGTGATAAATACGAGACCGTGGCAAAGAATTATTTAGTTCGCCACGGTTTATCGTTAATTGAAGAAAACT
TCATAGCAAAGTGTGGCGAAATTGATCTTATAATGCGCCATAACAATACGGTTGTGTTTACTGAGGTAAAATACCGCAAG
CAAACACGCTACGGACATGCCGCTGAAATGGTGACTGCCAAAAAGTCACAAAAGCTACTCAAAACAGCCAATGTTTGGCT
TATGCAGCAAGGCTTGTCGGTACACTCTACAGATTACAGGTTTGATATCATTGCCATCGAAGGGCCGAATGACACTATCG
ACTGGATTCAAAACGCGATTACCCAAGGATAA

Upstream 100 bases:

>100_bases
ATGGATGCATACTATCTAATGGATGCACTACCACAGATGAAAGCCGTACAAGATTACAGCATTACAGGTGAAACCGGCGT
ATTAACCATCGACAACAACT

Downstream 100 bases:

>100_bases
ACATGCTAGACAGCATCAAAGAAAGTTTTACAGAAAGTATTCAAATCCAAATTGCGGCGGCAGAAGCTCTGCCAGACGCA
ATCACGCATGCCGCTCAAGC

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 143; Mature: 143

Protein sequence:

>143_residues
MLFNVKSAGQSMGLFSRKFLSKPTITHKQVGDKYETVAKNYLVRHGLSLIEENFIAKCGEIDLIMRHNNTVVFTEVKYRK
QTRYGHAAEMVTAKKSQKLLKTANVWLMQQGLSVHSTDYRFDIIAIEGPNDTIDWIQNAITQG

Sequences:

>Translated_143_residues
MLFNVKSAGQSMGLFSRKFLSKPTITHKQVGDKYETVAKNYLVRHGLSLIEENFIAKCGEIDLIMRHNNTVVFTEVKYRK
QTRYGHAAEMVTAKKSQKLLKTANVWLMQQGLSVHSTDYRFDIIAIEGPNDTIDWIQNAITQG
>Mature_143_residues
MLFNVKSAGQSMGLFSRKFLSKPTITHKQVGDKYETVAKNYLVRHGLSLIEENFIAKCGEIDLIMRHNNTVVFTEVKYRK
QTRYGHAAEMVTAKKSQKLLKTANVWLMQQGLSVHSTDYRFDIIAIEGPNDTIDWIQNAITQG

Specific function: Unknown

COG id: COG0792

COG function: function code L; Predicted endonuclease distantly related to archaeal Holliday junction resolvase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0102 family [H]

Homologues:

Organism=Escherichia coli, GI1789538, Length=120, Percent_Identity=42.5, Blast_Score=102, Evalue=9e-24,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011856
- InterPro:   IPR011335
- InterPro:   IPR003509 [H]

Pfam domain/function: PF02021 UPF0102 [H]

EC number: NA

Molecular weight: Translated: 16307; Mature: 16307

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
4.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLFNVKSAGQSMGLFSRKFLSKPTITHKQVGDKYETVAKNYLVRHGLSLIEENFIAKCGE
CEECCCCCCCHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
IDLIMRHNNTVVFTEVKYRKQTRYGHAAEMVTAKKSQKLLKTANVWLMQQGLSVHSTDYR
EEEEEECCCEEEEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
FDIIAIEGPNDTIDWIQNAITQG
EEEEEEECCCCHHHHHHHHHCCC
>Mature Secondary Structure
MLFNVKSAGQSMGLFSRKFLSKPTITHKQVGDKYETVAKNYLVRHGLSLIEENFIAKCGE
CEECCCCCCCHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
IDLIMRHNNTVVFTEVKYRKQTRYGHAAEMVTAKKSQKLLKTANVWLMQQGLSVHSTDYR
EEEEEECCCEEEEEEEHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
FDIIAIEGPNDTIDWIQNAITQG
EEEEEEECCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA