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The map label for this gene is yrfB [H]

Identifier: 218691669

GI number: 218691669

Start: 3953093

End: 3953533

Strand: Reverse

Name: yrfB [H]

Synonym: ECED1_4051

Alternate gene names: 218691669

Gene position: 3953533-3953093 (Counterclockwise)

Preceding gene: 218691670

Following gene: 218691668

Centisome position: 75.89

GC content: 52.38

Gene sequence:

>441_bases
ATGAACATGTTCTTTGACTGGTGGTTCGCCACATCACTCCGCCTCCGCCAGTTTTGCTGGGCAGTCTGGTTGCTGGTGTT
AGTTACGCTCATTTTTCTGTCATTGACACACCATGAAGAGAGCGATGCATTAATTCGACTACGGGCAAATCATCACCAGC
AGTGGGCTGCACTGTATCGCCTGGTAGACACCACTTCCTTCAGCGAAGAAAAAACGCTGCCCTTTTCGCCACTGGATTTT
CAGTTATCCGGCGCGCAACTGGTTTACTGGCATCCATCCGCGCAGGGAGGTGAGTTGGCGTTGAAAACGCTGTGGGAAGC
AGTGCCGTCGGCATTTACACGGCTGGCAGAGCGCAACGTCAGCGTGAGCCGTTTTTTGTTAAGCGTGGAAGGTGATGACC
TTTTGTTCACGCTACAACTGGAGACGCCGCATGAGGGTTAA

Upstream 100 bases:

>100_bases
CGCCAGGATGCTTCTTTTCATCTCAATCAGCGGGGGGCCACGCAGCAGGATGCGCAGGGACGCTGGCAATTTGAGTATCA
GTTAACAAGGAAGGTTAGCG

Downstream 100 bases:

>100_bases
ACGCTGGTTGTTGGCAGGCATTGCATTGTGCCTTTTAACCGGTATGCGTGACCCTTTTAAACCGCCGGAAGATCTATGCC
GGATTAGCGAACTTAGCCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 146; Mature: 146

Protein sequence:

>146_residues
MNMFFDWWFATSLRLRQFCWAVWLLVLVTLIFLSLTHHEESDALIRLRANHHQQWAALYRLVDTTSFSEEKTLPFSPLDF
QLSGAQLVYWHPSAQGGELALKTLWEAVPSAFTRLAERNVSVSRFLLSVEGDDLLFTLQLETPHEG

Sequences:

>Translated_146_residues
MNMFFDWWFATSLRLRQFCWAVWLLVLVTLIFLSLTHHEESDALIRLRANHHQQWAALYRLVDTTSFSEEKTLPFSPLDF
QLSGAQLVYWHPSAQGGELALKTLWEAVPSAFTRLAERNVSVSRFLLSVEGDDLLFTLQLETPHEG
>Mature_146_residues
MNMFFDWWFATSLRLRQFCWAVWLLVLVTLIFLSLTHHEESDALIRLRANHHQQWAALYRLVDTTSFSEEKTLPFSPLDF
QLSGAQLVYWHPSAQGGELALKTLWEAVPSAFTRLAERNVSVSRFLLSVEGDDLLFTLQLETPHEG

Specific function: Required for the use of extracellular DNA as a nutrient [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell membrane; Single-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789795, Length=146, Percent_Identity=92.4657534246575, Blast_Score=271, Evalue=1e-74,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 16923; Mature: 16923

Theoretical pI: Translated: 5.50; Mature: 5.50

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.1 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNMFFDWWFATSLRLRQFCWAVWLLVLVTLIFLSLTHHEESDALIRLRANHHQQWAALYR
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHH
LVDTTSFSEEKTLPFSPLDFQLSGAQLVYWHPSAQGGELALKTLWEAVPSAFTRLAERNV
HHHCCCCCCCCCCCCCCCCEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
SVSRFLLSVEGDDLLFTLQLETPHEG
CHHHEEEEECCCCEEEEEEECCCCCC
>Mature Secondary Structure
MNMFFDWWFATSLRLRQFCWAVWLLVLVTLIFLSLTHHEESDALIRLRANHHQQWAALYR
CCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHHHH
LVDTTSFSEEKTLPFSPLDFQLSGAQLVYWHPSAQGGELALKTLWEAVPSAFTRLAERNV
HHHCCCCCCCCCCCCCCCCEEECCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCC
SVSRFLLSVEGDDLLFTLQLETPHEG
CHHHEEEEECCCCEEEEEEECCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]