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The map label for this gene is yrfA [H]

Identifier: 218691668

GI number: 218691668

Start: 3952699

End: 3953103

Strand: Reverse

Name: yrfA [H]

Synonym: ECED1_4050

Alternate gene names: 218691668

Gene position: 3953103-3952699 (Counterclockwise)

Preceding gene: 218691669

Following gene: 218691667

Centisome position: 75.88

GC content: 52.59

Gene sequence:

>405_bases
ATGAGGGTTAAACGCTGGTTGTTGGCAGGCATTGCATTGTGCCTTTTAACCGGTATGCGTGACCCTTTTAAACCGCCGGA
AGATCTATGCCGGATTAGCGAACTTAGCCAGTGGCGCTATCAGGGGATGGTAGGGAGAGGCGAGCGCATCATCGGTGTAA
TAAAAGATGGGCAAAAAAAATGGCGACGGGTGCAGCAAAACGATGTGCTGGAAAACGGCTGGACGATCTTACAGCTGACG
CCAGACGCACTAACGCTGGGAACCGGGACAAACTGCGAACCGCCACACTGGTTGTGGCAACGGCAAGGAGATACAAATGA
AGCAATGGATAGCCGCACTACTGTTGATGCTTATACCCGGCGTACAGGCGGCAAAGCCGCAAAAAGTGACGCTGATGGTG
GATGA

Upstream 100 bases:

>100_bases
GCATTTACACGGCTGGCAGAGCGCAACGTCAGCGTGAGCCGTTTTTTGTTAAGCGTGGAAGGTGATGACCTTTTGTTCAC
GCTACAACTGGAGACGCCGC

Downstream 100 bases:

>100_bases
CGTTCCGGTAGCTCAGGTGTTGCAGGTGCTGGCTGAACAGGAGAAGTTGAACCTGGTGGTTTCGCCAGACGTCAGCGGTA
CGGTGTCGTTACATTTAACT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 134; Mature: 134

Protein sequence:

>134_residues
MRVKRWLLAGIALCLLTGMRDPFKPPEDLCRISELSQWRYQGMVGRGERIIGVIKDGQKKWRRVQQNDVLENGWTILQLT
PDALTLGTGTNCEPPHWLWQRQGDTNEAMDSRTTVDAYTRRTGGKAAKSDADGG

Sequences:

>Translated_134_residues
MRVKRWLLAGIALCLLTGMRDPFKPPEDLCRISELSQWRYQGMVGRGERIIGVIKDGQKKWRRVQQNDVLENGWTILQLT
PDALTLGTGTNCEPPHWLWQRQGDTNEAMDSRTTVDAYTRRTGGKAAKSDADGG
>Mature_134_residues
MRVKRWLLAGIALCLLTGMRDPFKPPEDLCRISELSQWRYQGMVGRGERIIGVIKDGQKKWRRVQQNDVLENGWTILQLT
PDALTLGTGTNCEPPHWLWQRQGDTNEAMDSRTTVDAYTRRTGGKAAKSDADGG

Specific function: Required for the use of extracellular DNA as a nutrient [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87082256, Length=134, Percent_Identity=97.7611940298508, Blast_Score=266, Evalue=3e-73,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR019684 [H]

Pfam domain/function: PF10748 DUF2531 [H]

EC number: NA

Molecular weight: Translated: 15127; Mature: 15127

Theoretical pI: Translated: 9.33; Mature: 9.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.2 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.2 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVKRWLLAGIALCLLTGMRDPFKPPEDLCRISELSQWRYQGMVGRGERIIGVIKDGQKK
CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHH
WRRVQQNDVLENGWTILQLTPDALTLGTGTNCEPPHWLWQRQGDTNEAMDSRTTVDAYTR
HHHHHHHHHHHCCCEEEEECCCEEEECCCCCCCCCCHHHCCCCCCCHHHCCCCHHHHHHH
RTGGKAAKSDADGG
HCCCCCCCCCCCCC
>Mature Secondary Structure
MRVKRWLLAGIALCLLTGMRDPFKPPEDLCRISELSQWRYQGMVGRGERIIGVIKDGQKK
CCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHH
WRRVQQNDVLENGWTILQLTPDALTLGTGTNCEPPHWLWQRQGDTNEAMDSRTTVDAYTR
HHHHHHHHHHHCCCEEEEECCCEEEECCCCCCCCCCHHHCCCCCCCHHHCCCCHHHHHHH
RTGGKAAKSDADGG
HCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]